View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14425_high_11 (Length: 219)
Name: NF14425_high_11
Description: NF14425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14425_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 36767561 - 36767357
Alignment:
| Q |
1 |
gcaaaatataataatatacatgttcaacgtaactagcagaataactaaaacataatatatacatgagtttacaaaaagccaaggagtcccaaaacatcaa |
100 |
Q |
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| T |
36767561 |
gcaaaatataataatatacatgttcaacgtaactagcagaataactaaaacataatatatacatgagtttacaaaaagccaaggagtcccaaaacatcaa |
36767462 |
T |
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| Q |
101 |
ggtttaagtctgcttgcttaaaccctctgattatctttgacattacttgcggaactttcgacgcttaattcctccaaagatttctttaaattatcccgtt |
200 |
Q |
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| T |
36767461 |
ggtttaagtctgcttgcttaaaccctctgattatctttgacattacttgcggaactttccacgcttaattcgtccaaagatttctttaaattatcccgtt |
36767362 |
T |
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| Q |
201 |
catct |
205 |
Q |
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||||| |
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| T |
36767361 |
catct |
36767357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 36749226 - 36749173
Alignment:
| Q |
57 |
atatacatgagtttacaaaaagccaaggagtcccaaaacatcaaggtttaagtc |
110 |
Q |
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| T |
36749226 |
atatacatgagtttacaaaaagcaaaggagtcccaaaagatcaaggtttaagtc |
36749173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 36755908 - 36755839
Alignment:
| Q |
136 |
tttgacattacttgcggaactttcgacgcttaattcctccaaagatttctttaaattatcccgttcatct |
205 |
Q |
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|||||||||||| |||| |||| ||||||||||| ||||||| ||||||||| ||||||||||||||| |
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| T |
36755908 |
tttgacattactcttggaattttctacgcttaattcgtccaaagttttctttaatttatcccgttcatct |
36755839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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