View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14425_high_3 (Length: 379)
Name: NF14425_high_3
Description: NF14425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14425_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 45710049 - 45710398
Alignment:
| Q |
17 |
aaagttgtcatatttattaattgacgcactaacatatcattgagtacatgcataaaataattgtatattgacaatgcatactaattaaattcatatatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45710049 |
aaagttgtcatatttattaattgacgcactaacatatcattgagtacatgcataaaataattgtatattgacaatgcatactaattaaattcatatatca |
45710148 |
T |
|
| Q |
117 |
aactttgcagattttgattatnnnnnnntaattgcagcagaaatataactgcggccacaactatattctcatgnnnnnnnnt--tattacgaaaacaaat |
214 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
45710149 |
aactttgcagattttgataataaaaaaataattgcagcagaaatataactgcggccacaactatattctcatgaaaaaaaaaaatattacgaaagcaaat |
45710248 |
T |
|
| Q |
215 |
atttgaaagaatgactgttaggttaggtaggacctacaaggaggccaaagttgaagccaacgatgacggtattggcgatggaaatggaagcgagttgaac |
314 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45710249 |
atatgaaagaatgactgttaggttaggtaggacctacaaggaggccaaaattgaagccaacgatgacggtattggcgatggaaatggaagcgagttgaac |
45710348 |
T |
|
| Q |
315 |
gtcgccaaggtgaccggcaaaggcttgagtaacgacgttcatggtgaaag |
364 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45710349 |
gtcaccaaggtgaccggcaaaggcttgagtaacgacgttcatggtgaaag |
45710398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University