View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14425_high_4 (Length: 324)

Name: NF14425_high_4
Description: NF14425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14425_high_4
NF14425_high_4
[»] chr5 (7 HSPs)
chr5 (2-317)||(36767064-36767379)
chr5 (2-256)||(36748659-36748913)
chr5 (2-211)||(36756042-36756248)
chr5 (17-317)||(36771662-36771962)
chr5 (112-317)||(21138158-21138363)
chr5 (2-47)||(36755816-36755861)
chr5 (277-317)||(36748622-36748662)
[»] chr1 (3 HSPs)
chr1 (79-235)||(23446986-23447142)
chr1 (215-264)||(23462775-23462824)
chr1 (151-239)||(23433088-23433176)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 317
Target Start/End: Complemental strand, 36767379 - 36767064
Alignment:
Q  2 tctttaaattatcccgttcatctttaagactgatcatcaaatttttcaactcagcaatctcttctacaacagctttattttccttttcaatatcgctaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  36767379 tctttaaattatcccgttcatctttaagactgatcatcaaatttttcaactcagcaatctcttcaacaaaagctttattttccttttcaatatcgctaaa 36767280  T
Q  102 ctttttcccaatgacaagaagaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatga 201  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36767279 ctttttcccaatgacacgaagaagaaaggtcattcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatga 36767180  T
Q  202 tacttttccacactgaaatgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcag 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36767179 tacttttccacactgaaatgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcag 36767080  T
Q  302 taaaagatgatgtcca 317  Q
    ||||| ||||||||||    
T  36767079 taaaaaatgatgtcca 36767064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 36748913 - 36748659
Alignment:
Q  2 tctttaaattatcccgttcatctttaagactgatcatcaaatttttcaactcagcaatctcttctacaacagctttattttccttttcaatatcgctaaa 101  Q
    ||||||| ||||||| ||||||||||||||| |||| ||| ||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  36748913 tctttaatttatcccattcatctttaagactaatcaccaatttttttaactcagcaatctcttcaacaaaagctttgttttccttttcaatatcgctaaa 36748814  T
Q  102 ctttttcccaatgacaagaagaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatga 201  Q
    ||||| |||||||||| ||||||||||| ||    || |||  ||| |||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||    
T  36748813 cttttgcccaatgacacgaagaagaaagttcttatgagtgctgtccaccagactggtttggagtgccgtttcaaatcccaattccttaactttttcatga 36748714  T
Q  202 tacttttccacactgaaatgcttgtcaataaggtctccaagtggaaaattgtcat 256  Q
    ||||| |||| || ||| |||||||||||||||||| |||||||||||| |||||    
T  36748713 tacttctccataccgaagtgcttgtcaataaggtctgcaagtggaaaatcgtcat 36748659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 36756248 - 36756042
Alignment:
Q  2 tctttaaattatcccgttcatctttaagactgatcatcaaatttttcaactcagcaatctcttctacaacagctttattttccttttcaatatcgctaaa 101  Q
    ||||||| ||||||| ||||||||||||||| |||  ||| ||||| |||||| |||||||| | |||| | |||| |||||||||||||||||||||||    
T  36756248 tctttaatttatcccattcatctttaagactaatcgccaatttttttaactcaacaatctctccaacaaaatcttttttttccttttcaatatcgctaaa 36756149  T
Q  102 ctttttcccaatgacaagaagaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatga 201  Q
    |||||  ||||||||   | |||||||| |||  |||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||    
T  36756148 cttttgtccaatgac---acgaagaaagttcgtacgaatgcaatccaccaggctggtttggagtgccgtttcaaatcccaattccttaactttttcatga 36756052  T
Q  202 tacttttcca 211  Q
    | ||| ||||    
T  36756051 ttcttctcca 36756042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 36771962 - 36771662
Alignment:
Q  17 gttcatctttaagactgatcatcaaatttttcaactcagcaatctcttctacaacagctttattttccttttcaatatcgctaaactttttcccaatgac 116  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||| | || | |||||| | ||||||||||| ||||| |||| |||  |||||||     
T  36771962 gttcatctttaagacgaatcatcaactttttcaactcagcaatctctccaaccaaagctttgtattccttttcaaaatcgccaaacatttggccaatgat 36771863  T
Q  117 aagaagaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactg 216  Q
    | ||||||| || ||||  |||||||||||| | ||| | ||||| |||||| |||  |||| || ||||||  |||||||||||| | |||||  || |    
T  36771862 acgaagaagcaacgtcgtgcgaatgcaatccgctaggtttgtttgtagtgccctttgtaatctcagctccttagctttttcatgatgcatttccttaccg 36771763  T
Q  217 aaatgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaagatgatgtcc 316  Q
    |||||||| ||||||||||||||||||||||||  | ||| ||||||||| |   |||||||||||||||| ||| | ||||| ||||||  ||||||||    
T  36771762 aaatgcttatcaataaggtctccaagtggaaaaccgacatcccagattaatgcgtcatcatcatcaccactaccatttatctcggtaaaaagtgatgtcc 36771663  T
Q  317 a 317  Q
    |    
T  36771662 a 36771662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 317
Target Start/End: Complemental strand, 21138363 - 21138158
Alignment:
Q  112 atgacaagaagaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttcca 211  Q
    |||||| ||||||| ||||| | ||||| | ||||   |||||| ||||||||| |  |||||||| |||||||||| |||||||||||| ||||||||     
T  21138363 atgacatgaagaaggaaggttgttcgaacggaatctgtcaggctagtttggagtactctttcaaattccaactccttaactttttcatgaaacttttcct 21138264  T
Q  212 cactgaaatgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaagatga 311  Q
     |||||||||||| |  |||| | |||| |  |||||||| |||| ||||| | | |  | |||| |||||||||| | | |||||||||| ||| ||||    
T  21138263 gactgaaatgcttattgataaagcctccgaaaggaaaattatcatcccagactgatgtggtatcaccatcaccactactattgatctcagtgaaaaatga 21138164  T
Q  312 tgtcca 317  Q
     |||||    
T  21138163 cgtcca 21138158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 36755861 - 36755816
Alignment:
Q  2 tctttaaattatcccgttcatctttaagactgatcatcaaattttt 47  Q
    ||||||| ||||||||||||||||||||||| |||| ||| |||||    
T  36755861 tctttaatttatcccgttcatctttaagactaatcaccaatttttt 36755816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 36748662 - 36748622
Alignment:
Q  277 tcatcaccactgccactgatctcagtaaaagatgatgtcca 317  Q
    |||||||| || |||||||||||||||||| ||||||||||    
T  36748662 tcatcacctctcccactgatctcagtaaaaaatgatgtcca 36748622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 235
Target Start/End: Complemental strand, 23447142 - 23446986
Alignment:
Q  79 ttttccttttcaatatcgctaaactttttcccaatgacaagaagaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatc 178  Q
    |||||||||||  | || | |||||||| ||| || ||| ||||||| ||| ||  ||||||| ||||   |||||| ||||||||| || |||| ||||    
T  23447142 ttttccttttctgtttcaccaaacttttgccccattacacgaagaaggaagatcattcgaatggaatctgtcaggctagtttggagtaccctttctaatc 23447043  T
Q  179 ccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggt 235  Q
    | |||||||| |||||||| ||| |||||||  | ||||||| ||| || |||||||    
T  23447042 caaactccttaactttttcctgaaacttttcgtccctgaaattcttatcgataaggt 23446986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 23462775 - 23462824
Alignment:
Q  215 tgaaatgcttgtcaataaggtctccaagtggaaaattgtcatgccagatt 264  Q
    |||||||||| |||| || |||||||| |||||||||||||| |||||||    
T  23462775 tgaaatgcttatcaacaaagtctccaaatggaaaattgtcatcccagatt 23462824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 23433088 - 23433176
Alignment:
Q  151 aggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctcc 239  Q
    ||||| ||||||||| |  |||| ||| ||| |||||| |||||||||  | ||||||||  |||||| ||||| ||||||||||||||    
T  23433088 aggctagtttggagtactctttctaattccatctccttaactttttcaaaaaacttttccttactgaattgcttatcaataaggtctcc 23433176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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