View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14425_low_10 (Length: 243)

Name: NF14425_low_10
Description: NF14425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14425_low_10
NF14425_low_10
[»] scaffold0145 (1 HSPs)
scaffold0145 (4-237)||(12552-12785)
[»] chr4 (4 HSPs)
chr4 (4-237)||(16284932-16285165)
chr4 (4-161)||(18231449-18231604)
chr4 (5-161)||(11555916-11556070)
chr4 (18-131)||(11098355-11098468)
[»] chr6 (4 HSPs)
chr6 (4-237)||(10641216-10641449)
chr6 (4-230)||(14970060-14970288)
chr6 (4-159)||(10906699-10906854)
chr6 (45-161)||(9191065-9191181)
[»] chr7 (5 HSPs)
chr7 (5-161)||(22614701-22614857)
chr7 (4-161)||(11655474-11655631)
chr7 (4-232)||(20025970-20026198)
chr7 (18-119)||(13477489-13477596)
chr7 (60-232)||(4531649-4531820)
[»] chr5 (1 HSPs)
chr5 (4-237)||(24831922-24832161)
[»] chr3 (4 HSPs)
chr3 (4-237)||(14481522-14481761)
chr3 (70-220)||(17790941-17791091)
chr3 (70-220)||(19099381-19099531)
chr3 (94-154)||(22159871-22159931)
[»] chr2 (2 HSPs)
chr2 (17-232)||(44586360-44586574)
chr2 (177-237)||(24786317-24786377)
[»] scaffold1001 (1 HSPs)
scaffold1001 (4-143)||(1389-1527)
[»] chr1 (1 HSPs)
chr1 (42-155)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 12552 - 12785
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12552 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 12651  T
Q  104 atagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  12652 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 12751  T
Q  204 acatccatttattttattttagtattcatatcac 237  Q
    ||||||||||||||||||||||||||||| ||||    
T  12752 acatccatttattttattttagtattcatctcac 12785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 16285165 - 16284932
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16285165 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 16285066  T
Q  104 atagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 203  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16285065 atagttataggactccccatcattactctttatcatccacttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 16284966  T
Q  204 acatccatttattttattttagtattcatatcac 237  Q
    ||||||||||||||||||||||||||||| ||||    
T  16284965 acatccatttattttattttagtattcatctcac 16284932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 18231604 - 18231449
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 103  Q
    |||||| ||||||||||||||||||||||| ||  ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  18231604 gacatcgtcattctcatcattattataatataacatcatcattttctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtt 18231505  T
Q  104 atagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatc 161  Q
    | || ||| ||| ||| |||||||||||| ||||| ||| || |||||||||||||||    
T  18231504 acag-tat-ggattcctcatcattactctctatcaaccgtttatatcaccaccttatc 18231449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 11555916 - 11556070
Alignment:
Q  5 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 104  Q
    ||||| ||||||||||||||||||||||| ||  ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |    
T  11555916 acatcgtcattctcatcattattataatataacatcaacatttcctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtga 11556015  T
Q  105 tagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatc 161  Q
     || ||| ||| ||  |||||||||||| ||||| ||  || |||||||||||||||    
T  11556016 cag-tat-ggattcatcatcattactctctatcaaccatttatatcaccaccttatc 11556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 11098468 - 11098355
Alignment:
Q  18 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggact 117  Q
    |||||||||||||||| ||  |||| ||||||||   |||||||||||||||||||||||||||||| ||||||| ||||||  ||| | ||||||||||    
T  11098468 catcattattataatataacatcattatttcccacaatagtaatttctttacatatatataatattaatcgtcatcactctccattacaattataggact 11098369  T
Q  118 ccccatcattactc 131  Q
    || |||||||||||    
T  11098368 cctcatcattactc 11098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 10641449 - 10641216
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 103  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||     
T  10641449 gacatcatcattctcatcattattataatataacctcataatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcgctctctgtc 10641350  T
Q  104 atagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 203  Q
    | |||||||||||||| | |||||||||| |||||||||||| |||||||||||||||   || ||| ||||| ||| ||| ||||||||||||| || |    
T  10641349 acagttataggactcctcgtcattactctctatcatccgcttatatcaccaccttatctcttcattaatccacgcctcacgtgtgactcattctacgcca 10641250  T
Q  204 acatccatttattttattttagtattcatatcac 237  Q
    ||||||||||| ||||||||| ||||||| ||||    
T  10641249 acatccatttactttattttattattcatctcac 10641216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 14970060 - 14970288
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatat--atataatattactcgtcattactctctg 101  Q
    |||||| ||||||||||  ||||||||||| ||  ||||||||||||||||  ||||||||| || ||||  |||||||||||  |||||| | ||| ||    
T  14970060 gacatcgtcattctcattgttattataatataacatcatcatttcccatcgcggtaatttctataaatatatatataatattaaccgtcatcattctttg 14970159  T
Q  102 ttatagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgc 201  Q
    | | |||| ||||||||| |||||||||||| ||||||||  || ||||||||| |||||   || ||| ||||||| ||||| |||||||||||||       
T  14970160 tcacagttgtaggactcctcatcattactctctatcatccatttatatcaccactttatctcttcattaatccacactttacgagtgactcattctacat 14970259  T
Q  202 taacatccatttattttattttagtattc 230  Q
     ||||| | |||||||||||||| |||||    
T  14970260 caacattcctttattttattttattattc 14970288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 10906854 - 10906699
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 103  Q
    |||||| ||||||||||||||||||||||| ||  |||||||||| |||| || | || | || ||||||| |||||||||  |  | | |||||||||     
T  10906854 gacatcgtcattctcatcattattataatataacatcatcatttcacatcctatttatatgttgacatatacataatattaacccccttcactctctgtc 10906755  T
Q  104 atagttataggactccccatcattactctttatcatccgcttgtatcaccacctta 159  Q
      |||||||||| ||| | |||||||||||| ||| ||| || |||||||||||||    
T  10906754 gcagttataggattcctcgtcattactctttgtcaaccgtttatatcaccacctta 10906699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 9191065 - 9191181
Alignment:
Q  45 tttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgct 144  Q
    |||| ||||||| | |||| || |||||||||| |||| | || |||| ||||| | | | |||||||||| ||| |||||||||||| ||||| ||| |    
T  9191065 tttctcatcgtatttatttattcacatatatattatatcaatcatcatcactctttatcacagttataggattcctcatcattactctctatcaaccgtt 9191164  T
Q  145 tgtatcaccaccttatc 161  Q
    | |||||||||||||||    
T  9191165 tatatcaccaccttatc 9191181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 161
Target Start/End: Complemental strand, 22614857 - 22614701
Alignment:
Q  5 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 104  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |    
T  22614857 acatcgtcattctcttcattattataatataacctcatcatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcactctctgtca 22614758  T
Q  105 tagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatc 161  Q
    ||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||    
T  22614757 tagttataggactcctcatcaatactctctatcatccgcttatatcaccaccttatc 22614701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 11655474 - 11655631
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 103  Q
    |||||| |||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| || || | |||||||||     
T  11655474 gacatcgtcattctcttcattattataatataacctcatcattttccatcgtagtaatttctttacatatatataatattaatcatcgtcactctctgtc 11655573  T
Q  104 atagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatc 161  Q
    | || ||||||||||| ||||| || |||||||||||||||| |||||||||||||||    
T  11655574 acagctataggactcctcatcaatattctttatcatccgcttatatcaccaccttatc 11655631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 20025970 - 20026198
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 103  Q
    |||||||||||| ||||  ||||||||||| ||  ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| ||||| |||     
T  20025970 gacatcatcattgtcattgttattataatataacatcatcatttgccatcatggtaatttctttacatatatataatatgaatcgtcatcactctttgtc 20026069  T
Q  104 atagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 203  Q
    |||||| ||||||||| | |||||| ||| ||||||  | || |||||| ||||||||   || ||| || |||||||||||||||||||||  | |  |    
T  20026070 atagttgtaggactcctcttcattattctctatcatatgtttatatcacaaccttatctcttcattaatcaacaccttacgcgtgactcatttgacgtca 20026169  T
Q  204 acatccatttattttattttagtattcat 232  Q
    |||||| |||||| ||||||| |||||||    
T  20026170 acatccctttattctattttattattcat 20026198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 13477596 - 13477489
Alignment:
Q  18 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatata------tataatattactcgtcattactctctgttatagttat 111  Q
    |||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||      |||||||||| ||||||| ||||| ||||| ||||||    
T  13477596 catcattattataatataacatcatcctttcccatcgtagtaatttctttacatatatatatatataatattaatcgtcatcactctttgttacagttat 13477497  T
Q  112 aggactcc 119  Q
    ||||||||    
T  13477496 aggactcc 13477489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 4531820 - 4531649
Alignment:
Q  60 atttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttgtatcaccacctta 159  Q
    |||| |||||||||||||||||| | | ||||| |||||  || | | |||| ||| ||| |||||||||||| ||||| ||| || |||||||||||||    
T  4531820 atttatttacatatatataatatcaattgtcatcactcttcgtcaca-ttat-ggattcctcatcattactctctatcaaccgtttatatcaccacctta 4531723  T
Q  160 tcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttattttattttagtattcat 232  Q
    ||   || ||| ||||  |||||| ||||||||| || || || |||| || | |||||||||||| |||||||    
T  4531722 tctcttcattaatccaacccttacacgtgactcatttatacgccaacacccctctattttattttattattcat 4531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 24832161 - 24831922
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatat------ataatattactcgtcattactc 97  Q
    |||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||||||||||||||||||      ||||||||| || |||| ||||    
T  24832161 gacatcgtcattctcatcaatattatagtataacctcatcatttctcatcgtagtaatttctttacatatatgtatatataatattaatcatcatcactc 24832062  T
Q  98 tctgttatagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 197  Q
    | ||| | | |||||||||||| |||||||||||| ||||||||||||  ||||||| | ||||   || ||| || || ||||||||||||||||||||    
T  24832061 tttgtcacaattataggactcctcatcattactctctatcatccgcttacatcaccatcgtatctcttcattagtcaactccttacgcgtgactcattct 24831962  T
Q  198 atgctaacatccatttattttattttagtattcatatcac 237  Q
    | || ||||||| |||||||||||||| ||||||| ||||    
T  24831961 acgccaacatccctttattttattttattattcatctcac 24831922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 14481761 - 14481522
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatata------atattactcgtcattactc 97  Q
    |||||| |||| ||||||| ||||||| || || |||||||| ||||||||||||||||||||||||||||||||      |||||| || |||| ||||    
T  14481761 gacatcgtcatcctcatcaatattatagtataacctcatcatgtcccatcgtagtaatttctttacatatatatatatataatattaatcatcatcactc 14481662  T
Q  98 tctgttatagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 197  Q
    | ||| | |||||||||||||| |||||||||||| ||||||||||||  |||||||   ||||   || ||| ||||| ||||||||||||||||||||    
T  14481661 tttgtcacagttataggactcctcatcattactctctatcatccgcttacatcaccattgtatctcttcattaatccactccttacgcgtgactcattct 14481562  T
Q  198 atgctaacatccatttattttattttagtattcatatcac 237  Q
    | || ||||||| |||||||||||||| ||||||| ||||    
T  14481561 acgccaacatccctttattttattttattattcatctcac 14481522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 17790941 - 17791091
Alignment:
Q  70 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgtt 169  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | |||||||||| || || |||||||||   || ||    
T  17790941 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 17791040  T
Q  170 attccacaccttacgcgtgactcattctatgctaacatccatttattttat 220  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||    
T  17791041 aatccacactttactcgtggctcattctacgctgacatccctttactttat 17791091  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 19099381 - 19099531
Alignment:
Q  70 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgtt 169  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | |||||||||| || || |||||||||   || ||    
T  19099381 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 19099480  T
Q  170 attccacaccttacgcgtgactcattctatgctaacatccatttattttat 220  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||    
T  19099481 aatccacactttactcgtggctcattctacgctgacatccctttactttat 19099531  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 22159871 - 22159931
Alignment:
Q  94 actctctgttatagttataggactccccatcattactctttatcatccgcttgtatcacca 154  Q
    ||||| ||| |||||||||||| ||| |||||||||||| ||||| ||| || ||||||||    
T  22159871 actctttgtcatagttataggattcctcatcattactctctatcaaccgtttatatcacca 22159931  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 44586574 - 44586360
Alignment:
Q  17 tcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggac 116  Q
    |||| |||||||||||  ||  ||||||||||  ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||| || ||| |||     
T  44586574 tcattattattataatttaacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacag-tat-ggat 44586477  T
Q  117 tccccatcattactctttatcatccgcttgtatcaccaccttatcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttat 215  Q
    ||| |||||||||||| ||||| ||| || |||||||||||||||   |  ||| ||||  |||||||| ||||||| |||||||  ||||||| | |||    
T  44586476 tcctcatcattactctctatcaaccgtttatatcaccaccttatctctttattaatccaacccttacgcatgactcatttctatgtcaacatccctctat 44586377  T
Q  216 tttattttagtattcat 232  Q
    ||||||| | |||||||    
T  44586376 tttatttcattattcat 44586360  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 24786317 - 24786377
Alignment:
Q  177 accttacgcgtgactcattctatgctaacatccatttattttattttagtattcatatcac 237  Q
    |||||||| |||||| |||||| |  ||||||| |||||||||||||| ||||||| ||||    
T  24786317 accttacgtgtgacttattctacgtcaacatccctttattttattttattattcatctcac 24786377  T

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Target: scaffold1001 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 1389 - 1527
Alignment:
Q  4 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 103  Q
    |||||| ||||||||||||||||||||||| || |||||||||| |||| || ||||||| ||| || ||||| ||||||| | ||||| ||||||| |     
T  1389 gacatcgtcattctcatcattattataatataacctcatcattttccattgttgtaatttatttccacatata-aatattaatagtcatcactctctttc 1487  T
Q  104 atagttataggactccccatcattactctttatcatccgc 143  Q
    |  ||||||||||||| ||| | |||||| ||||||||||    
T  1488 acggttataggactcctcataaatactctatatcatccgc 1527  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 1567154 - 1567041
Alignment:
Q  42 tcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatcc 141  Q
    ||||||| ||||||| | |||| |||||||||||||||||| | ||||||| ||||| ||| | | ||||| || ||| ||| ||||| || ||||  ||    
T  1567154 tcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattattaccctctatccacc 1567055  T
Q  142 gcttgtatcaccac 155  Q
    | || |||||||||    
T  1567054 gtttatatcaccac 1567041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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