View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14425_low_2 (Length: 526)
Name: NF14425_low_2
Description: NF14425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14425_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 196 - 507
Target Start/End: Original strand, 17110743 - 17111054
Alignment:
| Q |
196 |
agggtttatgaatttagggtttagggattaatttt-tagggattaagctagcacagaaattgtttaagtttgcactggacatagattgtaactacagtag |
294 |
Q |
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| T |
17110743 |
agggtttatgaatttagggtttagggattaattttttagggattaagctagcacagaaattgtttaagtgggcactggacatagattgtaactacagtag |
17110842 |
T |
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| Q |
295 |
atagtttagttttcttacatctctgttatcgttttttcaacatcgacttcgcagttctgtgttgcgttgtgtggcacaacatgtgagtaaactgtacttg |
394 |
Q |
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| T |
17110843 |
atagtttagttttcttacatttctgttatcgttttttcaacaccgacttcgcagttctgtgttgcgttgtgtggcacaacatgtgagtaaactgtacttg |
17110942 |
T |
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| Q |
395 |
taattgaagtaaacgagaatgataattattaattatctatatttctaacaataattgttttatagttaactataaagtttaagtgttttttattgactaa |
494 |
Q |
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| T |
17110943 |
taattgaagtaaaggagaatgataattattaattatctatatttctaacaataattgttttatagttaactataaagttt-agtgttttttattgactaa |
17111041 |
T |
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| Q |
495 |
atcacacatttgc |
507 |
Q |
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| T |
17111042 |
atcacacatttgc |
17111054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 17110524 - 17110609
Alignment:
| Q |
20 |
gctttctctttaggttatgaatctgattcttgttttattctctaatgctaagttcttgttttggattgttgttgttcactggttca |
105 |
Q |
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| T |
17110524 |
gctttctctttcggttatgaatctgattcttgttttattctctaatgctaagttattgttttggattgttgttgttcactggttca |
17110609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 17110689 - 17110723
Alignment:
| Q |
171 |
aacaattgataattgtgtaaaatttagggtttatg |
205 |
Q |
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| T |
17110689 |
aacaattgataattgtgtaaaatttagggtttatg |
17110723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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