View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14425_low_7 (Length: 296)
Name: NF14425_low_7
Description: NF14425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14425_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 9573881 - 9574134
Alignment:
| Q |
1 |
accccattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaaaatacacgttttagacattgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9573881 |
accccattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaagatacacgttttagacattgc |
9573980 |
T |
|
| Q |
101 |
taatcgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttccttataccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9573981 |
taatcgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttccttataccat |
9574080 |
T |
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| Q |
201 |
gatatacttctataattttatctaagaaatattcaagatacacactactaatca |
254 |
Q |
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| T |
9574081 |
gatatacttctataattttatctaagaaatattcaagatacacactactaatca |
9574134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 9578458 - 9578699
Alignment:
| Q |
5 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaaaatacacgttttagacattgctaat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
9578458 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaagataaacgttttagacattgctaag |
9578557 |
T |
|
| Q |
105 |
cgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttccttataccatgata |
204 |
Q |
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| T |
9578558 |
tgttacttccaagttcc------tattttacatcacattaaatttggtcttccttctcatgtttgcaaaatgaagcctccgtcttccttataccatgata |
9578651 |
T |
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| Q |
205 |
tacttctataattttatctaagaaatattcaagatacacactactaat |
252 |
Q |
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| T |
9578652 |
tacttctataattttatctaagagctgttcaagattcaccctactaat |
9578699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 9582960 - 9583142
Alignment:
| Q |
5 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaaaatacacgttttagacattgctaat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
9582960 |
cattgaaatgctgaatattttcttccactttcataagcttcgaatcagcttatattccatatctcaaagcaagaagataaacgttttagacattgctaag |
9583059 |
T |
|
| Q |
105 |
cgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttcctt |
193 |
Q |
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| T |
9583060 |
tgttacttccaagttcc------tattttacatcacattaaatttggtcttccttctcatgtttgtaaaatgaagccttcctcttcctt |
9583142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 48878069 - 48878256
Alignment:
| Q |
3 |
cccattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaaga--aaatacacgttttagacattgc |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||| | | ||| ||||| |
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| T |
48878069 |
cccattgagatgctgaatattttcttccactttcataagctttgaatcagcttatattcaatatctcaaagcaagaagaaacacaagcataagaaattgc |
48878168 |
T |
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| Q |
101 |
taatcgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttcctta |
194 |
Q |
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| || ||||||| |||| |||| |||||||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
48878169 |
ttattagtacttcctagtt------cttattttacatcatattaaaattggtcttctttctcatgtttgcaggatgaagcctccctcttcctta |
48878256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 48921620 - 48921568
Alignment:
| Q |
159 |
tctcatgtttgcaaactgaagcctccctcttccttataccatgatatacttct |
211 |
Q |
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| T |
48921620 |
tctcatgtttgcaaaatgaagcttccctcttccttatagcatgatatacttct |
48921568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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