View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14426_low_1 (Length: 445)
Name: NF14426_low_1
Description: NF14426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14426_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 11480398 - 11479982
Alignment:
| Q |
11 |
tatagatgattaagagctatactaggagtcaaaactcatcaaacattagtggcagcaggtcctgcctaaaatattaaggggatctaaaaatacttaagta |
110 |
Q |
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| T |
11480398 |
tatagatgattaagagctatactaggtgtcaaaactcgtcaaacatcagtggcaga---tcttgcctaaaatattaaggggatctaaaaatactaaagta |
11480302 |
T |
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| Q |
111 |
aaagtcatagtcatttcccccaaatgtgagatgtatttttgtatcttcctaagttattttatgtnnnnnnnnttggtggggggagccactgctccgtttg |
210 |
Q |
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| T |
11480301 |
aaagtcatagtcatttcccccaaatgtgagatgtatttttgtatcttcctaagttattttatgtaaaaaaaattggtggggg-------tgctcccttgg |
11480209 |
T |
|
| Q |
211 |
gctccttaagagctccgccactgcatcaacataacttcatcaacaacgatagttgatgtggttaaccataatttacgagttttgatggagatcatttgaa |
310 |
Q |
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| T |
11480208 |
gcttcttaagagctccgccgctgcatcaacataacttcatcaacaacgatagttgatgtggttaaccataatttacgagttttgatggagatcatttgaa |
11480109 |
T |
|
| Q |
311 |
catctaaaaaattatggttaatcatgtcgaaatatgtcttttnnnnnnncacgtttatatttgttgttgatgaaaatacaatgatggttagtaaatataa |
410 |
Q |
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| T |
11480108 |
catctaaaaaattatggttaatcacgtcgaaatatgtcttttaaaaaaacacgtttatatttgttgttgatgaagaaacaatgatggttaataaagataa |
11480009 |
T |
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| Q |
411 |
atttattattcttttacttagtataat |
437 |
Q |
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| T |
11480008 |
atttattattcttttacttagcataat |
11479982 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 31306031 - 31305986
Alignment:
| Q |
187 |
tggggggagccactgctccgtttggctccttaagagctccgccact |
232 |
Q |
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| T |
31306031 |
tggggggagccactgctcccttaggctccttaagagctctgccact |
31305986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 34211580 - 34211631
Alignment:
| Q |
183 |
ttggtggggggagccactgctccgtttggctccttaagagctccgccactgc |
234 |
Q |
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| T |
34211580 |
ttggtggggggagccactgctcccttagactccttaaaagttccgccactgc |
34211631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 6047897 - 6047855
Alignment:
| Q |
190 |
ggggagccactgctccgtttggctccttaagagctccgccact |
232 |
Q |
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| T |
6047897 |
ggggagccaatgctccttttggctctttaagagctccgccact |
6047855 |
T |
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