View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14426_low_3 (Length: 256)
Name: NF14426_low_3
Description: NF14426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14426_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 11480655 - 11480463
Alignment:
| Q |
17 |
acataccctttctcatttcctgccctccttccttttccatattttgggattgaagtacatataaccctcccatcctggcattgatgatgtcgcaatcaaa |
116 |
Q |
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| T |
11480655 |
acataccctttctcatctcctgccctccttccttttccatattttgggattgaagtacatataaccctcccatcctggcattgatg---tcgcaatcaaa |
11480559 |
T |
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| Q |
117 |
ttttcaaaacttggatacaatatttaactaaaacactaaaatggcaatatacccaatatataactttgatttgagaaaaatgcaaatttagaactc |
212 |
Q |
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| T |
11480558 |
ttttcaaaacttggatacaatatttaactaaaacactaaaatggcaatatacccaatatataactttgatttgagaaaaatgcaaatttagaactc |
11480463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 11486477 - 11486401
Alignment:
| Q |
17 |
acataccctttctcatttcctgccctccttccttttccatattttgggattgaagtacatataaccctcccatcctg |
93 |
Q |
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| T |
11486477 |
acatatcctttctcatttcctgctctctttccttttccatattttgggattgaagtacatataactcttccatcctg |
11486401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 11475242 - 11475169
Alignment:
| Q |
19 |
ataccctttctcatttcctgccctccttccttttccatattttgggattgaagtacatataaccctcccatcct |
92 |
Q |
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| T |
11475242 |
ataccctttctcatttcctgctttccttccttttccgtactttgggattgaagtacatataactctcccatcct |
11475169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 11463351 - 11463275
Alignment:
| Q |
17 |
acataccctttctcatttcctgccctccttccttttccatattttgggattgaagtacatataaccctcccatcctg |
93 |
Q |
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| T |
11463351 |
acataccctttctcatttcctgcttccattccagttccatattttgggactgagttgcatataaccctcccatcctg |
11463275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 21547882 - 21547807
Alignment:
| Q |
17 |
acataccctttctcatttcctgccctccttccttttccatattttgggattgaagtacatataaccctcccatcct |
92 |
Q |
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||||||||||| ||||||||||| | |||| |||||||||||||| ||||| ||||||||||| ||||||||| |
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| T |
21547882 |
acataccctttttcatttcctgcttcctttccatttccatattttggatttgaattacatataaccttcccatcct |
21547807 |
T |
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