View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14426_low_5 (Length: 238)
Name: NF14426_low_5
Description: NF14426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14426_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26914815 - 26915040
Alignment:
| Q |
1 |
cttacacatcatattacaaaactttccaaaagtttttggtatcctgccttgtggatcaactttaataagaattccttcatcggttcggatgaatacagcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914815 |
cttacacatcatattacaaaactttccaaaagtttctggtatcctgccttgtggatcaactttaataagaattccttcatcggttcggatgaatacagcg |
26914914 |
T |
|
| Q |
101 |
cttactctaccagacaagcaaagaggactacccattattgcaaggagagcctaaatttcatatacattcagagtcaggtacatcaagaaaacgag---at |
197 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
26914915 |
cttactctaccagacaagcaaagaggactatccattattgcaaggagagcctaaattccatatacattcagagtcaggtacatcaagaaaacgagataat |
26915014 |
T |
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| Q |
198 |
aatctttcaaacttttttgggatatg |
223 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26915015 |
aatctttcaaacttttttgggatatg |
26915040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 51182552 - 51182767
Alignment:
| Q |
1 |
cttacacatcatattacaaaactttccaaaagtttttggtatcctgccttgtggatcaactttaataagaattccttcatcggttcggatgaatacagcg |
100 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
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| T |
51182552 |
cttacccatcatattacaaaaatttccaaaagtttttggtatcctggtttgtggatcaactttaataagaattccttcaccggttctgatgaatatagcg |
51182651 |
T |
|
| Q |
101 |
cttactctaccagacaagcaaagaggactacccattattgcaaggagagcctaaatttcatatacattcagagtcaggtacatcaagaaaacgag---at |
197 |
Q |
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||||||||||||| ||||||||| | ||||| || |||||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| || |
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| T |
51182652 |
cttactctaccagccaagcaaagtgcactactcaatattgcaaggagagcctaaaatccatatacattcagagttaggtacatcaagaaaatgagataat |
51182751 |
T |
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| Q |
198 |
aatctttcaaactttt |
213 |
Q |
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|||||||||||||||| |
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| T |
51182752 |
aatctttcaaactttt |
51182767 |
T |
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