View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14427_high_12 (Length: 329)
Name: NF14427_high_12
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 3300420 - 3300126
Alignment:
| Q |
18 |
taatgttaagaacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3300420 |
taatgttaagaacgttgctgttaaggatctcaagcgtggttatgttgcctcaaactccaaggatgaccctgccaaggaggctgctaactttacatctcaa |
3300321 |
T |
|
| Q |
118 |
gtgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttattt |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| |||||||| || |
|
|
| T |
3300320 |
gtgatcattatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacattgctgtcaaatttgctgagcttgtta |
3300221 |
T |
|
| Q |
218 |
ccaagcatgacaggttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
| ||| ||||||| |||||| ||||| |||| ||| |||| |||||||| ||| |||||||||| | || |||||||||||||| ||||| |
|
|
| T |
3300220 |
ctaagattgacaggcgttctggaaaggagattgagaaggagcccaaattcttgaagaacggtgatgctggtattattaagatgattcccaccaag |
3300126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 43044686 - 43044392
Alignment:
| Q |
18 |
taatgttaagaacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaa |
117 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
43044686 |
taatgtcaagaatgttgctgttaaggatctcaagcgtgggtatgttgcctcaaactccaaggatgacccagccaaggaggctgctaactttacatctcaa |
43044587 |
T |
|
| Q |
118 |
gtgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttattt |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||| || |
|
|
| T |
43044586 |
gtgatcataatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacattgctgtcaagtttgctgagcttgtta |
43044487 |
T |
|
| Q |
218 |
ccaagcatgacaggttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
| ||| ||| ||| |||||||||||| |||| ||| |||| |||||||| |||||| ||||||| | || |||||||||||||| ||||| |
|
|
| T |
43044486 |
ctaagattgataggcgttctggtaaggagattgagaaggagcccaaattcttgaagaatggcgatgctggtattattaagatgattcccaccaag |
43044392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 43067305 - 43067599
Alignment:
| Q |
18 |
taatgttaagaacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaa |
117 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
43067305 |
taatgtcaagaatgttgctgttaaggatctcaagcgtgggtatgttgcctcaaactccaaggatgacccagccaaggaggctgctaactttacatctcaa |
43067404 |
T |
|
| Q |
118 |
gtgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttattt |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||| || |
|
|
| T |
43067405 |
gtgatcataatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacattgctgtcaagtttgctgagcttgtta |
43067504 |
T |
|
| Q |
218 |
ccaagcatgacaggttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
| ||| ||| ||| |||||||||||| |||| ||| |||| |||||||| |||||| ||||||| | || |||||||||||||| ||||| |
|
|
| T |
43067505 |
ctaagattgataggcgttctggtaaggagattgagaaggagcccaaattcttgaagaatggcgatgctggtattattaagatgattcccaccaag |
43067599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 43083530 - 43083236
Alignment:
| Q |
18 |
taatgttaagaacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaa |
117 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
43083530 |
taatgtcaagaatgttgctgttaaggatctcaagcgtgggtatgttgcctcaaactccaaggatgacccagccaaggaagctgctaactttacatctcaa |
43083431 |
T |
|
| Q |
118 |
gtgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||| || |
|
|
| T |
43083430 |
gtgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacattgctgtcaagtttgctgagcttgtta |
43083331 |
T |
|
| Q |
218 |
ccaagcatgacaggttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
| ||| ||| ||| |||||||||||| |||| ||| |||| |||||||| |||||| ||||||| | || |||||||||||||| ||||| |
|
|
| T |
43083330 |
ctaagattgataggcgttctggtaaggagattgagaaggagcccaaattcttgaagaatggcgatgctggtattattaagatgattcccaccaag |
43083236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 43077182 - 43077476
Alignment:
| Q |
18 |
taatgttaagaacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaa |
117 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||| |||| |||||||| || ||||||| |||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
43077182 |
taatgttgagaacgttgatgttaaggatctcaagagtggctatgttgcctctaactccatggatgacccagccaaggaggccgctaactttacatctcaa |
43077281 |
T |
|
| Q |
118 |
gtgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttattt |
217 |
Q |
| |
|
|| || ||||||||||||||||| |||||| |||||||||||| ||||||||| |||||||||||| |||| || |||| ||||| ||||||| || |
|
|
| T |
43077282 |
gtcgtcgtcatgaatcaccctggcaagattgaaaatggctatgcacctgttcttcactgccacaccttccacattcttgtcaagtttgatgagcttgtta |
43077381 |
T |
|
| Q |
218 |
ccaagcatgacaggttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
||||| ||| ||| |||||||| || |||| | || |||| |||| |||||||||||||||||| | || |||||||||||||| ||||| |
|
|
| T |
43077382 |
ccaagattgataggcgttctggtatggtgattgagacgaagcccaaattcctgatgaatggtgatgctggtattattaagatgattcccaccaag |
43077476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 45984297 - 45984581
Alignment:
| Q |
28 |
aacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaagtgatcatca |
127 |
Q |
| |
|
|||||||||| || |||||||||| ||||||||||| ||||||||| ||| ||| || || ||||| ||| |||||||||||| || ||||| | |
|
|
| T |
45984297 |
aacgttgctgctagggatctcaagcaaggttatgttgcctcaaactccgagggtgacccagcggtagaggccgctcactttacatctcttgttatcatta |
45984396 |
T |
|
| Q |
128 |
tgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttatttccaagcatga |
227 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||| ||| |
|
|
| T |
45984397 |
cgaatcaccctggccagattcgaaatggctacacacctgttcttgactgccacacctcccacattgctgtcaagtttgctgagcttatttccaaggttga |
45984496 |
T |
|
| Q |
228 |
caggttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
||||| ||||||| ||||||||| | | |||| ||| ||||||| ||||||| ||| | || |||||||||||||| ||||| |
|
|
| T |
45984497 |
caggtgttctggtgaggaaattgagagggagcccaaatttttgatgagtggtgatactggtattattaagatgattcccaccaag |
45984581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 35 - 313
Target Start/End: Original strand, 38138471 - 38138749
Alignment:
| Q |
35 |
ctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaagtgatcatcatgaatca |
134 |
Q |
| |
|
||||||| |||||| ||| || |||||||| ||| |||||||| |||| || |||| |||||||||||| |||||||| | || ||||||| |||||| |
|
|
| T |
38138471 |
ctgttaaggatctccggcgaggctatgttgcctcagactccaagcatgacccagccacggaggctgctaaatttacatcccgtgttatcatcacgaatca |
38138570 |
T |
|
| Q |
135 |
ccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttatttccaagcatgacaggttt |
234 |
Q |
| |
|
|||||| |||| |||||||||| | ||| |||| ||||||||||||||||||||| ||| ||||| || ||||| || ||||| |||||||||| |
|
|
| T |
38138571 |
aactggccggattcaaaatggctatacacctattctggactgccacacctcccacgttcctgtcaagtttgctaagcttgttaccaagtttgacaggttt |
38138670 |
T |
|
| Q |
235 |
tctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaagt |
313 |
Q |
| |
|
|||||| |||||| | ||| |||| |||||||| |||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
38138671 |
tctggtttggaaatcgagaaggagcccaaattcttgaagaatggtgatgctggtgttgttaagatgattcccaccaagt |
38138749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 7891571 - 7891717
Alignment:
| Q |
43 |
gatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaagtgatcatcatgaatcaccctggcc |
142 |
Q |
| |
|
||||||| ||| || |||||||| |||||||||||| || || || | |||||||||| | ||||||||||| || |||||| ||||||| ||||||| |
|
|
| T |
7891571 |
gatctcaggcgaggctatgttgcctcaaactccaagcgtggcccagctatggaggctgctgaatttacatctcatgttatcatcttgaatcatcctggcc |
7891670 |
T |
|
| Q |
143 |
agattggaaatggctatgcccctgttcttgactgccacacctcccac |
189 |
Q |
| |
|
||||| ||||||||||| | ||| |||| |||||||||||||||||| |
|
|
| T |
7891671 |
agattagaaatggctatacacctattctcgactgccacacctcccac |
7891717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 40035287 - 40035385
Alignment:
| Q |
18 |
taatgttaagaacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctca |
116 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||| ||||||||||| ||||||||||| |||||||| |||| ||| || | ||| ||||| ||||| |
|
|
| T |
40035287 |
taatgttaagaacatgtctgttaaggatctcaagcaaggttatgttgcctcaaactccaacgatgatccagccatggaagccgttaaatttacttctca |
40035385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 4231151 - 4230857
Alignment:
| Q |
18 |
taatgttaagaacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaa |
117 |
Q |
| |
|
|||||||||||| ||| |||| || ||||||||||||||||||||||| |||||| |||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
4231151 |
taatgttaagaatgtttctgtcaaggatctcaagcgtggttatgttgcctcaaacaccaaggatgacccagccaaggaggctgctaacttcacatctcag |
4231052 |
T |
|
| Q |
118 |
gtgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttattt |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || ||||| |||||||| || |
|
|
| T |
4231051 |
gtgattatcatgaatcaccctggccagattggaaatggttatgcccctgttcttgactgccacacctcccacattgcagtcaagtttgctgagcttgtta |
4230952 |
T |
|
| Q |
218 |
ccaagcatgacaggttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
| ||| ||||||| |||||||||||| || | ||| ||| |||| ||| |||||| ||||||| | || |||||||||||||| ||||| |
|
|
| T |
4230951 |
ctaagattgacaggcgttctggtaaggagatcgagaaggagcctaaattcctgaagaatggagatgctggtattattaagatgattcccaccaag |
4230857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 19965332 - 19965415
Alignment:
| Q |
231 |
gttttctggtaaggaaattgcaaagatgcccggattcttgatgaatg--gtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965332 |
gttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgtgatgctgctgttgttaagatgattcccgccaag |
19965415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 19965162 - 19965339
Alignment:
| Q |
31 |
gttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaagtgatcatcatga |
130 |
Q |
| |
|
||||||| ||| |||||| ||| ||||||||||| ||||||||||| |||| || |||| || ||| ||| ||||||||||| | | ||||| | | |
|
|
| T |
19965162 |
gttgctgctaaggatctccagccaggttatgttgcctcaaactccaacaatgacccagccatgggggccgctgactttacatcttatcttatcattacaa |
19965261 |
T |
|
| Q |
131 |
atcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctg |
208 |
Q |
| |
|
| |||||||| |||| || ||||||| | ||||||||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
19965262 |
aggaccctggcatgattcaaactggctatacacctgttcttgactgccacacctcccacattgctgtcgagttttctg |
19965339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 7529854 - 7530147
Alignment:
| Q |
19 |
aatgttaagaacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaag |
118 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||| |
|
|
| T |
7529854 |
aatgttaagaatgttgctgtgaaggatctcaagcgtggtttcgttgcatccaactccaaggatgaccctgcaaaggaagctgccaacttcacttcccaag |
7529953 |
T |
|
| Q |
119 |
tgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttatttc |
218 |
Q |
| |
|
| ||||||||||| |||||||| |||||||||||||| ||||| || || || || ||||||||||| ||| ||| ||| ||||| |||| ||| || | |
|
|
| T |
7529954 |
tcatcatcatgaaccaccctggacagattggaaatggatatgcaccagtgctcgattgccacacctctcacattgctgtgaagtttgctgaacttgttac |
7530053 |
T |
|
| Q |
219 |
caagcatgacaggttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
|||| ||||||| ||||||||||| |||| ||| |||| ||||||| |||||||||||||| | | |||||||| ||||| ||||| |
|
|
| T |
7530054 |
caagattgacaggcgatctggtaaggagattgagaaggagcccaagttcttgaagaatggtgatgctggtatcattaagatggttcccaccaag |
7530147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 7520317 - 7520610
Alignment:
| Q |
19 |
aatgttaagaacgttgctgttaaagatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaag |
118 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||| |
|
|
| T |
7520317 |
aatgttaagaatgttgccgtgaaggatctcaagcgtggtttcgttgcatccaactccaaggatgaccctgcaaaggaagctgccaacttcacttcccaag |
7520416 |
T |
|
| Q |
119 |
tgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttatttc |
218 |
Q |
| |
|
| ||||||||||| |||||||| |||||||||||||| ||||| || || || || ||||||||||| ||| ||| ||| ||||| |||| ||| || | |
|
|
| T |
7520417 |
tcatcatcatgaaccaccctggacagattggaaatggatatgcaccagtgctcgattgccacacctctcacattgctgtgaagtttgctgaacttgttac |
7520516 |
T |
|
| Q |
219 |
caagcatgacaggttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
|||| ||||||| ||||||||||| |||| ||| |||| ||||||| ||| |||||||||| | | |||||||| ||||| ||||| |
|
|
| T |
7520517 |
caagattgacaggcgatctggtaaggagattgagaaggagcccaagttcttgaagaacggtgatgctggtatcattaagatggttcccaccaag |
7520610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 312
Target Start/End: Complemental strand, 33860495 - 33860226
Alignment:
| Q |
43 |
gatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaagtgatcatcatgaatcaccctggcc |
142 |
Q |
| |
|
|||||||||| || |||||||| ||| |||||| ||| | || |||| ||| || ||| |||||||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
33860495 |
gatctcaagccgggctatgttgcctcagactccatcgatcacccagccacggaagccgctcactttacatctcaagttatcatcacaaatgaccctggcc |
33860396 |
T |
|
| Q |
143 |
agattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttatttccaagcatgacaggttttctggtaa |
242 |
Q |
| |
|
|||| |||| |||| | | ||| ||||||||||||||||||||||||||| ||| |||| |||||||||| ||||| |||| |||||| |||||| |
|
|
| T |
33860395 |
tgattagaaaaggctttacacctattcttgactgccacacctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaa |
33860296 |
T |
|
| Q |
243 |
ggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
|||||||| ||| ||| | |||||||| || |||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
33860295 |
ggaaattgagaaggagcctgaattcttgaagagtggtgatgctgctgctattaagatgattcccaccaag |
33860226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 16231841 - 16231772
Alignment:
| Q |
44 |
atctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatc |
113 |
Q |
| |
|
|||||| ||| || ||||| || ||||||||| ||||||| || |||| |||||||||||| |||||||| |
|
|
| T |
16231841 |
atctcatgcgaggctatgtagcctcaaactccgaggatgaaccagccatggaggctgctaaatttacatc |
16231772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 34690276 - 34690239
Alignment:
| Q |
268 |
ttgatgaatggtgatgctgctgttgttaagatgattcc |
305 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
34690276 |
ttgaagaatggtgatgccgctgttgttaagatgattcc |
34690239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 34690486 - 34690429
Alignment:
| Q |
58 |
tatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctc |
115 |
Q |
| |
|
|||||||| ||| |||||||| |||| || |||| |||||||||||| |||||||||| |
|
|
| T |
34690486 |
tatgttgcgtcagactccaagtatgaaccggccatggaggctgctaaatttacatctc |
34690429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 34712688 - 34712651
Alignment:
| Q |
268 |
ttgatgaatggtgatgctgctgttgttaagatgattcc |
305 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
34712688 |
ttgaagaatggtgatgccgctgttgttaagatgattcc |
34712651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 34712898 - 34712841
Alignment:
| Q |
58 |
tatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctc |
115 |
Q |
| |
|
|||||||| ||| |||||||| |||| || |||| |||||||||||| |||||||||| |
|
|
| T |
34712898 |
tatgttgcgtcagactccaagtatgaaccggccatggaggctgctaaatttacatctc |
34712841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 312
Target Start/End: Complemental strand, 4619349 - 4619081
Alignment:
| Q |
44 |
atctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaagtg--atcatcatgaatcaccctggc |
141 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||| |||| || ||||||||||| | |||||| ||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
4619349 |
atctcaagcgaggctatgttgtctcaaactccaagcatgacccagccaaggaggcagataactt--catctcatgtgttatcatcaggaatcaccctggc |
4619252 |
T |
|
| Q |
142 |
cagattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttatttccaagcatgacaggttttctggta |
241 |
Q |
| |
|
|||||||||||||||||| | ||||||||| | ||||||||||||||| || ||| ||||| | ||||| | ||||| |||||||| |||||||| |
|
|
| T |
4619251 |
cagattggaaatggctatacacctgttcttcattgccacacctcccacactgctgtcaagtttgataagcttctagccaagattgacaggtgttctggta |
4619152 |
T |
|
| Q |
242 |
aggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
||| ||||| || |||| |||| ||| |||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
4619151 |
aggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaag |
4619081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 4297101 - 4296922
Alignment:
| Q |
43 |
gatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaagtgatcatcatgaatcaccctggcc |
142 |
Q |
| |
|
|||||||||| || |||||||| |||||| || ||||||| || |||||||||| || ||||||||||||| || ||||||| ||||||||| ||| |
|
|
| T |
4297101 |
gatctcaagcaaggctatgttgcctcaaaccccgaggatgacccagccaaggaggtcactcactttacatctcatgttatcatcacaaatcaccctagcc |
4297002 |
T |
|
| Q |
143 |
agattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttatttccaag |
222 |
Q |
| |
|
|||||| | | |||||| | ||| ||||| ||||||||||||||||| || ||| | ||| |||||||||||| |||| |
|
|
| T |
4297001 |
agattgaagaaggctatacacctattcttcactgccacacctcccacattcctgtcaaatttgctgagcttatttacaag |
4296922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 312
Target Start/End: Original strand, 4788079 - 4788348
Alignment:
| Q |
43 |
gatctcaagcgtggttatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaagtgatcatcatgaatcaccctggcc |
142 |
Q |
| |
|
|||||||||| || ||||||| | |||| ||| ||||||| ||||||||||| | | ||||||||||||| || ||||||| ||||||||||| | |
|
|
| T |
4788079 |
gatctcaagcaaggctatgttgtctaaaacaccatggatgatgtggccaaggaggccgattactttacatctcatgttatcatcacaaatcaccctggac |
4788178 |
T |
|
| Q |
143 |
agattggaaatggctatgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttatttccaagcatgacaggttttctggtaa |
242 |
Q |
| |
|
|||||| ||| |||||| | ||| ||||| |||||||||||||||| ||| ||| || ||| ||||||||||| |||| ||||| ||||||| | |
|
|
| T |
4788179 |
agattgaaaaaggctatacgcctattcttcactgccacacctcccaaattgctgtcgaatttgatgagcttatttgcaaggttgacaatcattctggtta |
4788278 |
T |
|
| Q |
243 |
ggaaattgcaaagatgcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
|| ||||| ||| ||| | |||||||| ||||||||||| || | || || ||||| ||||| ||||| |
|
|
| T |
4788279 |
ggtaattgaggagaggcctgcattcttgaagaatggtgatgatggtcttattgagatggttcccaccaag |
4788348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 58 - 312
Target Start/End: Complemental strand, 16348793 - 16348539
Alignment:
| Q |
58 |
tatgttgcatcaaactccaaggatgatcctgccaaggaggctgctaactttacatctcaagtgatcatcatgaatcaccctggccagattggaaatggct |
157 |
Q |
| |
|
|||||||| |||||||||||| || | || ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||| ||| || | |
|
|
| T |
16348793 |
tatgttgcctcaaactccaagcatcacccagccaaggaggccattaactttacatctcaagttatcatcacgaatcaccctggccaaattgaaaagggtt |
16348694 |
T |
|
| Q |
158 |
atgcccctgttcttgactgccacacctcccacgttgttgttgagttttctgagcttatttccaagcatgacaggttttctggtaaggaaattgcaaagat |
257 |
Q |
| |
|
|| | ||||||||| |||||||||||||| || ||| ||| ||||| || ||||| || ||||| |||||||||||||| ||| ||||| ||| |
|
|
| T |
16348693 |
atacacctgttcttaactgccacacctcctacattgctgtcaagtttgctaagcttcttgccaaggtagacaggttttctggcaagataattgtgaagga |
16348594 |
T |
|
| Q |
258 |
gcccggattcttgatgaatggtgatgctgctgttgttaagatgattcccgccaag |
312 |
Q |
| |
|
|||| |||||||| ||| ||||||| || || || ||||||||||| ||||| |
|
|
| T |
16348593 |
gcccaaattcttgaagaaaggtgatggtggcattattcagatgattcccaccaag |
16348539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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