View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14427_high_14 (Length: 309)

Name: NF14427_high_14
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14427_high_14
NF14427_high_14
[»] chr7 (4 HSPs)
chr7 (18-239)||(36156193-36156415)
chr7 (216-301)||(36155945-36156030)
chr7 (173-220)||(36429589-36429636)
chr7 (149-213)||(5100816-5100883)
[»] chr4 (5 HSPs)
chr4 (148-220)||(19997140-19997214)
chr4 (143-220)||(8901547-8901625)
chr4 (143-204)||(8915393-8915454)
chr4 (71-128)||(19533922-19533979)
chr4 (84-128)||(20875359-20875403)
[»] chr5 (1 HSPs)
chr5 (79-128)||(30119001-30119050)
[»] chr8 (1 HSPs)
chr8 (84-128)||(10536876-10536920)
[»] chr1 (1 HSPs)
chr1 (84-128)||(22328074-22328118)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 36156415 - 36156193
Alignment:
Q  18 taattatctaccatgactactccaattgtcttatatgataaaaacattccattttatagaaagtttatattttgaaaatattcatggtgacaaattcaac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36156415 taattatctaccatgactactccaattgtcttatatgataaaaacattccattttatacaaagtttatattttgaaaatattcatggtgacaaattcaac 36156316  T
Q  118 aatatcttatagctactatttgtcttcaactatatatataagaaaataacatacataaattatcaaactaacccaa-tttaattaactgacacataagta 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||    
T  36156315 aatatcttatagctactatttgtcttcaactatatatttaagaaaataacatacataaattatcaaactaacccaattttaattatctaactcataagta 36156216  T
Q  217 aaataaaaaataattgagttaga 239  Q
    ||||||||| |||||||||||||    
T  36156215 aaataaaaattaattgagttaga 36156193  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 36156030 - 36155945
Alignment:
Q  216 aaaataaaaaataattgagttagagttaaatttcctatttatattccactaaacatgcaaaatcttatctctattgaattcttctc 301  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||    
T  36156030 aaaataaaaattaattgagttagagttaaatttcctatttttattctactaaacaagcaaaatcttatctctattgaatttttctc 36155945  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 36429636 - 36429589
Alignment:
Q  173 taaattatcaaactaacccaatttaattaactgacacataagtaaaat 220  Q
    |||| |||||||||||||||||||||| |||||| ||||||| |||||    
T  36429636 taaactatcaaactaacccaatttaatcaactgatacataagcaaaat 36429589  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 5100816 - 5100883
Alignment:
Q  149 atatatataagaaaataacatac---ataaattatcaaactaacccaatttaattaactgacacataa 213  Q
    |||||| || |||||||||||||   ||||||||||||| ||| |  |||||||||||||||||||||    
T  5100816 atatatttaggaaaataacataccccataaattatcaaattaatcatatttaattaactgacacataa 5100883  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 19997214 - 19997140
Alignment:
Q  148 tatatatataagaaaataacataca---taaattatcaaactaacccaatttaattaactgacacataagtaaaat 220  Q
    ||||||||||||||||||| ||| |   |||||||||||| ||||| |||||||||||||||| |||||| |||||    
T  19997214 tatatatataagaaaataa-atagaagataaattatcaaattaaccaaatttaattaactgacgcataagcaaaat 19997140  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 8901547 - 8901625
Alignment:
Q  143 tcaactatatatataagaaaataacat---acataaattatcaaactaacccaatttaattaactgacacataagtaaaat 220  Q
    |||| ||||||| ||||||||||||||   |||||||||||||||||||   ||||||||||  ||||||||||| |||||    
T  8901547 tcaattatatatttaagaaaataacatgcaacataaattatcaaactaa--aaatttaattagttgacacataagcaaaat 8901625  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 8915393 - 8915454
Alignment:
Q  143 tcaactatatatataagaaaataacatacataaattatcaaactaacccaatttaattaact 204  Q
    |||| ||||||| ||| |||||||||||||| |||||| ||||| || ||| ||||||||||    
T  8915393 tcaattatatatttaataaaataacatacatgaattatgaaacttactcaaattaattaact 8915454  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 19533922 - 19533979
Alignment:
Q  71 ttatagaaagtttatattttgaaaatattcatggtgacaaattcaacaatatcttata 128  Q
    ||||| ||| || ||||||| ||||||||||| | ||||||| |||||||||||||||    
T  19533922 ttataaaaatttgatattttaaaaatattcatcgagacaaatccaacaatatcttata 19533979  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 20875359 - 20875403
Alignment:
Q  84 atattttgaaaatattcatggtgacaaattcaacaatatcttata 128  Q
    ||||||||||||||||||||| |||||||  ||||| ||||||||    
T  20875359 atattttgaaaatattcatggagacaaatcaaacaacatcttata 20875403  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 30119001 - 30119050
Alignment:
Q  79 agtttatattttgaaaatattcatggtgacaaattcaacaatatcttata 128  Q
    |||| |||||| ||||||||| || | |||||||||||||||||||||||    
T  30119001 agttaatatttagaaaatatttatcgagacaaattcaacaatatcttata 30119050  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 10536920 - 10536876
Alignment:
Q  84 atattttgaaaatattcatggtgacaaattcaacaatatcttata 128  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||    
T  10536920 atattttgaaaatattcatcgagacgaatccaacaatatcttata 10536876  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 22328074 - 22328118
Alignment:
Q  84 atattttgaaaatattcatggtgacaaattcaacaatatcttata 128  Q
    ||||||||||||||||||| | ||| |||||||||| ||||||||    
T  22328074 atattttgaaaatattcatcgagacgaattcaacaacatcttata 22328118  T

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