View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14427_high_19 (Length: 232)
Name: NF14427_high_19
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_high_19 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6840307 - 6840534
Alignment:
| Q |
1 |
ataaatagtgatgaaaataatttaactagaaaggaaaaaatatgaaaatttagatagtgatgatagatttcannnnnnnnn---cttcagtaatttctct |
97 |
Q |
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| T |
6840307 |
ataaatagtgatgaaaataatttaactagaaaggaaaaaatatgaaaatttagatagtgatgatagatttcatttttttttttccttcagtaatttctct |
6840406 |
T |
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| Q |
98 |
tggtaaattaatctttctagtagctagtatattgagtgcatattaataactacgttaggataaaacagaaaataaataataattttctcaacatatgttt |
197 |
Q |
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| T |
6840407 |
tggtaaattaatctttctagtagctagtatattgagtgcatattaataactacattaggataaaacagaaaataaataataattttctcaacatatgttt |
6840506 |
T |
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| Q |
198 |
caattagtactaaaaactgttgcctttg |
225 |
Q |
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| T |
6840507 |
caattagtactaaaaactgttgcctttg |
6840534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 6595172 - 6595238
Alignment:
| Q |
122 |
tagtatattgagtgcatattaataactacgttaggataaaacagaaaataaataataattttctcaa |
188 |
Q |
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| T |
6595172 |
tagtatattgagtacatattaataactataataaaataaatcagaaaataaataataattttctcaa |
6595238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 6620952 - 6621047
Alignment:
| Q |
88 |
taatttctcttggtaaa-ttaatctttctagtagctagtatattgagtgcatattaataactacgttaggataaaacagaaaataaataataattttctc |
186 |
Q |
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| T |
6620952 |
taatttctcttggtaaaattaaattttctagtag----tatattgagcacatattaataactataatagaataaatcagaaaataaataataattttctc |
6621047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 10323 - 10420
Alignment:
| Q |
88 |
taatttctcttggtaaattaatctttctagtagctagtatattgagtgcatattaataactacgttaggataaaacagaaaataaataa-taattttctc |
186 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||| ||||| |||||||||||||| |||||||||| |
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| T |
10323 |
taatttctcttggtaaattaaattttctagtag----tatattgagcacatattaataactataatagaataaatcagaaaataaataattaattttctc |
10418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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