View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14427_high_5 (Length: 413)
Name: NF14427_high_5
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_high_5 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Original strand, 25744981 - 25745373
Alignment:
| Q |
13 |
aatatcccaaaagcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgtaacttgaatgaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744981 |
aatatcccaaaagcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgtaacttgaatgaa |
25745080 |
T |
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| Q |
113 |
ataatcaccttgataaagtttaagtggtttcattcatgtttatatgttttaacaaagttgaagtttatatgaaaacaatctgaagcagctaaattagatg |
212 |
Q |
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| T |
25745081 |
ataatcaccttgataaagtttaagtggtttgattcatgtttatatgttttaacaaagttgaagtttatatgaaaacaatctgaagcagctaaattagatg |
25745180 |
T |
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| Q |
213 |
ctcttgccaatgaaataatgaatgactgtactcacattattacatgctttaaaaattcacattggacgattaatcgtctctcgatttaccactatactgg |
312 |
Q |
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| T |
25745181 |
ctcttgcc--------aatgaatgactgtactcgcattcttacatgctataaaaattcacattggacgattaatcgtctcacgatttaccactatactgg |
25745272 |
T |
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| Q |
313 |
tttaagtaataatgacttgaagcatacctgagaaagatgaaggactctcgaagtatgagggtccaagcctccaactttagtcatagatggatattgccac |
412 |
Q |
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| T |
25745273 |
tttaagtaatgatgacttgaagcatacctgagaaagatggaggactctagaagtatgagggtccaagcctccaactttagtcatggatggatattgccac |
25745372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 4349074 - 4348672
Alignment:
| Q |
13 |
aatatcccaaaagcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgta--acttgaatg |
110 |
Q |
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|||||||||||||||||| ||||||||||| || | ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| | |
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| T |
4349074 |
aatatcccaaaagcgaagcgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag |
4348975 |
T |
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| Q |
111 |
aaataatcaccttgataaagtttaagtggtttcattcatgtttatatgttttaacaaagttgaagtttatat--------gaaaacaatctgaagcagct |
202 |
Q |
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| T |
4348974 |
aaataatccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaact |
4348875 |
T |
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| Q |
203 |
aaattagatgctcttgccaatgaaataatgaatgactgtactcacattattacatgctttaaaaattcacattggacgattaatcgtctctcgatttacc |
302 |
Q |
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| T |
4348874 |
atattagatgctcttgccaatgaa--------tgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttacc |
4348783 |
T |
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| Q |
303 |
actatactggtttaagtaataatgacttgaagcatacctgagaaagatgaaggactctcgaagtatgagggtccaagcctccaactttagtcatagatgg |
402 |
Q |
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| T |
4348782 |
actatactggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctagaagtatggggatccaagccaccaactttagtcatagatgg |
4348683 |
T |
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| Q |
403 |
atattgccaca |
413 |
Q |
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||||||||||| |
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| T |
4348682 |
atattgccaca |
4348672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 18928523 - 18928595
Alignment:
| Q |
332 |
aagcatacctgagaaagatgaaggactctcga---agtatgagggtccaagcctccaactttagtcatagatg |
401 |
Q |
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| T |
18928523 |
aagcatacctgagaaagatggaggactctggaggaagtatgagggttcaagcctccaagtttggtcatagatg |
18928595 |
T |
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