View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14427_high_7 (Length: 371)
Name: NF14427_high_7
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 25 - 347
Target Start/End: Complemental strand, 14750603 - 14750281
Alignment:
| Q |
25 |
aaacattacaacggagtatgactcatataaaatagcggattaaaccaccatgggttgaagtcgtaataaaagttaggaaattgcgacaccaaccttcaga |
124 |
Q |
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| T |
14750603 |
aaacattacaagggagtataactcatataaactagaggattaaaccaccatggattgaagtcgtaataaaagttaggaaattgcgacaaccaccatcaga |
14750504 |
T |
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| Q |
125 |
aatgaaacttagtgcgatctagtaattggtctaacgataattcattgttgctgaagatacgagcattatgctccttacaaatacaccaaatacctaccag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14750503 |
aatgaaacttagtgcgatctagtaattggtctaacgataattcattgttgctgaagatacgagcattacgctccttacaaatacaccaaatacctaccag |
14750404 |
T |
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| Q |
225 |
ccagatcactttaggacaaaactatatatccttcctgaactcatggaaaccaccgaatcacaaaccatgctctccaatatcatgagggctgaaccgttga |
324 |
Q |
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| T |
14750403 |
ccagatcactttaggacaaaactatatatccttcctgaactcatggaaactgccgaatcacaaaccatgctctccaatatcatgagggctgaaccgttga |
14750304 |
T |
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| Q |
325 |
gattcccaaccacctatgaacac |
347 |
Q |
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|||||||||||| |||||||||| |
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| T |
14750303 |
gattcccaaccagctatgaacac |
14750281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 304
Target Start/End: Original strand, 7816588 - 7816752
Alignment:
| Q |
140 |
gatctagtaattggtctaacgataattcattgttgctgaagatacgagcattatgctccttacaaatacaccaaatacctaccagccagatcactttagg |
239 |
Q |
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| T |
7816588 |
gatctaataattggtcaaacgataattctttattgctagaaatatgagtattacgtttctttcaaatacactttatacttgtcagccagatcactttaag |
7816687 |
T |
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| Q |
240 |
acaaaactatatatccttcctgaactcatggaaaccaccgaatcacaaaccatgctctccaatat |
304 |
Q |
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| T |
7816688 |
atcaaacttaatatccttcctgaactcatggaaaccaccaaattgcaaacgatgcttttcaatat |
7816752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 294
Target Start/End: Original strand, 24480965 - 24481118
Alignment:
| Q |
140 |
gatctagtaattggtctaacgataattcattgttgctgaagatacgagcattatgctccttacaaatacaccaaatacctaccagccagatcactttagg |
239 |
Q |
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| T |
24480965 |
gatctagtaagtggtctaatcataattt-ttgttgtttaaaatacgagcattatgcacctaacaaatacaccagttaccctccaaccaaatcactttaag |
24481063 |
T |
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| Q |
240 |
acaaaactatatatccttcctgaactcatggaaaccaccgaatcacaaaccatgc |
294 |
Q |
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| T |
24481064 |
agaaaacttgatatcctttatgaactcatggaaatcgctgaattgcaaaccatgc |
24481118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 29317911 - 29317773
Alignment:
| Q |
139 |
cgatctagtaattggtctaacgataattcattgttgctgaagatacgagcattatgctccttacaaatacaccaaatacctaccagccagatcactttag |
238 |
Q |
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||||||||||| | ||||||||||||||| |||||| |||| ||||||| |||| ||||||| |||||||| || ||| | | | | ||| ||||||| |
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| T |
29317911 |
cgatctagtaactagtctaacgataattctttgttgttgaaaatacgagtattacgctccttccaaatacatcatatatcagctaactagaccactttaa |
29317812 |
T |
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| Q |
239 |
gacaaaactat--atatccttcctgaactcatggaaacc |
275 |
Q |
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||||||||| | ||||||||| ||||||| ||| |||| |
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| T |
29317811 |
gacaaaacttttgatatccttcttgaactcgtggtaacc |
29317773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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