View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14427_low_12 (Length: 350)
Name: NF14427_low_12
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 3292007 - 3291674
Alignment:
| Q |
18 |
taattgattgagagtactacaaggaagaagnnnnnnnn-cataacgatgtatgtttaattatagattatatgatatgttttatgttgtgatcaatgcatg |
116 |
Q |
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| T |
3292007 |
taattgattgagagtactacaaggaagaagaaaaaaaaacagaacgatgtatgtttaattatagattatatgatatattttatgttgtgatcaatgcatg |
3291908 |
T |
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| Q |
117 |
acatttttgtttagataatatcaacttttcaagtaaattcagtgaaacaaggttatatcttacactaatagataataaaccattctaactgacattaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3291907 |
acatttttgtttagataatatcaacttttcaagtaaattcagtgaaacaaggttatatcttacactaatagataataaaccactctaactgacattaaaa |
3291808 |
T |
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| Q |
217 |
ctgactaacaaactaatcaggtggttaataacaaatgaacttctaataagataaacaaaccacattaataaatcaaactaaaaggaatataactaagtat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3291807 |
ctgactaacaaactaatcaggtggttaataacaaataaacttctaataagataaacaaaccacattaataaatcaaactaaaaggaatataactaagtat |
3291708 |
T |
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| Q |
317 |
cacaatactttttctcaagtcgcgtgaaatatgt |
350 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
3291707 |
cacaatactttttctcaagtcgggtgaaatatgt |
3291674 |
T |
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