View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14427_low_16 (Length: 319)

Name: NF14427_low_16
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14427_low_16
NF14427_low_16
[»] chr5 (12 HSPs)
chr5 (175-301)||(34475952-34476078)
chr5 (10-97)||(34459111-34459198)
chr5 (176-228)||(430514-430566)
chr5 (170-228)||(2566238-2566296)
chr5 (178-228)||(15292168-15292218)
chr5 (178-228)||(32269940-32269990)
chr5 (171-228)||(23023502-23023559)
chr5 (180-228)||(35310364-35310412)
chr5 (127-158)||(34475919-34475950)
chr5 (172-217)||(15506769-15506814)
chr5 (195-228)||(25663175-25663208)
chr5 (170-227)||(37873782-37873839)
[»] chr8 (10 HSPs)
chr8 (113-228)||(38815143-38815258)
chr8 (176-228)||(3187882-3187934)
chr8 (170-222)||(39434573-39434625)
chr8 (175-228)||(4699782-4699835)
chr8 (175-223)||(500153-500201)
chr8 (196-228)||(8882276-8882308)
chr8 (170-226)||(22589481-22589537)
chr8 (127-218)||(4073397-4073488)
chr8 (191-228)||(24451047-24451084)
chr8 (130-214)||(18804479-18804563)
[»] scaffold0009 (1 HSPs)
scaffold0009 (170-228)||(103012-103070)
[»] chr6 (9 HSPs)
chr6 (170-228)||(3137390-3137448)
chr6 (172-228)||(959489-959545)
chr6 (113-228)||(34168770-34168884)
chr6 (170-224)||(7749387-7749441)
chr6 (170-220)||(17249456-17249506)
chr6 (170-228)||(29338222-29338280)
chr6 (190-228)||(32115644-32115682)
chr6 (171-220)||(34554427-34554476)
chr6 (196-228)||(357859-357891)
[»] chr3 (12 HSPs)
chr3 (130-228)||(26772624-26772722)
chr3 (170-228)||(32546701-32546759)
chr3 (143-228)||(13582389-13582474)
chr3 (170-228)||(39583372-39583430)
chr3 (177-226)||(26276528-26276577)
chr3 (176-228)||(53785621-53785673)
chr3 (170-228)||(26856905-26856963)
chr3 (190-228)||(38671023-38671061)
chr3 (111-228)||(44198614-44198731)
chr3 (177-226)||(49017880-49017929)
chr3 (196-224)||(4763939-4763967)
chr3 (169-217)||(5338551-5338599)
[»] chr7 (11 HSPs)
chr7 (177-228)||(48539094-48539145)
chr7 (170-228)||(45613985-45614043)
chr7 (143-223)||(982828-982908)
chr7 (176-228)||(21326981-21327033)
chr7 (160-228)||(28517430-28517498)
chr7 (170-226)||(45003042-45003098)
chr7 (177-228)||(27027773-27027824)
chr7 (178-225)||(38839240-38839287)
chr7 (130-228)||(5825139-5825237)
chr7 (178-228)||(40726623-40726673)
chr7 (170-219)||(32584506-32584555)
[»] chr1 (10 HSPs)
chr1 (121-224)||(30688414-30688517)
chr1 (170-228)||(24177654-24177712)
chr1 (178-228)||(34644480-34644530)
chr1 (177-227)||(45835330-45835380)
chr1 (130-226)||(5453961-5454057)
chr1 (170-225)||(28493477-28493532)
chr1 (176-226)||(2764391-2764441)
chr1 (170-220)||(2898608-2898658)
chr1 (176-216)||(1114023-1114063)
chr1 (115-151)||(10348636-10348672)
[»] chr4 (13 HSPs)
chr4 (170-228)||(39001303-39001361)
chr4 (170-226)||(53619492-53619548)
chr4 (170-228)||(3329902-3329960)
chr4 (178-228)||(4419177-4419227)
chr4 (130-228)||(30940875-30940973)
chr4 (177-226)||(48657060-48657109)
chr4 (113-228)||(26521338-26521452)
chr4 (172-226)||(45661599-45661653)
chr4 (178-228)||(55933603-55933653)
chr4 (195-228)||(16955391-16955424)
chr4 (170-219)||(50464448-50464497)
chr4 (195-227)||(18981682-18981714)
chr4 (176-228)||(50442622-50442674)
[»] chr2 (8 HSPs)
chr2 (172-228)||(13413259-13413315)
chr2 (176-228)||(17344550-17344602)
chr2 (170-228)||(4413209-4413267)
chr2 (170-228)||(9685558-9685616)
chr2 (113-205)||(30602338-30602430)
chr2 (190-225)||(41868054-41868089)
chr2 (170-228)||(18745097-18745155)
chr2 (196-228)||(44686348-44686380)
[»] scaffold0148 (1 HSPs)
scaffold0148 (175-228)||(33161-33214)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 34475952 - 34476078
Alignment:
Q  175 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctaggctcaatattgttcaaaaaatgatgttgatcatatcaaaaataagaa 274  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34475952 gcctttttggacggaaaaaacaatcttcgtaaacacaacattcatggacctaggctcaatattgttcaaaaaatgatgttgatcatatcaaaaataagaa 34476051  T
Q  275 aggaaaaggaaagattaatactaatag 301  Q
    ||||||| ||||||| || ||||||||    
T  34476052 aggaaaatgaaagatcaagactaatag 34476078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 34459111 - 34459198
Alignment:
Q  10 aagaatattgtagaaatgaagtttggggagttgcaaggatctcttgaaggtcatgagcataggctcggtgaaagagaagcagagaaaa 97  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34459111 aagaatattgtagaaatgaagtttgaggagttgcaaggatctcttgaaggtcatgagcataggctcggtgaaagagaagcagagaaaa 34459198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 430514 - 430566
Alignment:
Q  176 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||| || | || ||||||||||||||||||||||||||||||||||    
T  430514 cctttttggatggcataatcaatcctcgtaaacacaacattcatggacctagg 430566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 2566296 - 2566238
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||| || |||| |||||||||||||||||||||| ||||| |||||    
T  2566296 gctagacctttttggatggcaaaatcaatcctcgtaaacacaacattgatggatctagg 2566238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 15292218 - 15292168
Alignment:
Q  178 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||| || |||| |||||||| |||||||||||||||||||||||||    
T  15292218 tttttggatggcaaaatcaatcctcataaacacaacattcatggacctagg 15292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 32269990 - 32269940
Alignment:
Q  178 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||| ||  ||| ||||||||||||||||||||||||||||||||||    
T  32269990 tttttggatggcgaaatcaatcctcgtaaacacaacattcatggacctagg 32269940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 23023502 - 23023559
Alignment:
Q  171 ctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||||||||||||| |  |||| ||||| ||||||||||||||||||| ||||||||    
T  23023502 ctaggcctttttggatgacaaaatcaatcttcgtaaacacaacattcatcgacctagg 23023559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 35310364 - 35310412
Alignment:
Q  180 tttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||| || |||| |||| |||||||||||||||||||||||||||||    
T  35310364 tttggatggcaaaaccaattctcgtaaacacaacattcatggacctagg 35310412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 158
Target Start/End: Original strand, 34475919 - 34475950
Alignment:
Q  127 taattacacatgaacggaaggcaagcaggtaa 158  Q
    ||||||||||||||||||||||||||||||||    
T  34475919 taattacacatgaacggaaggcaagcaggtaa 34475950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 15506814 - 15506769
Alignment:
Q  172 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattc 217  Q
    ||||||||||| || || |||| |||||||||||||||||||||||    
T  15506814 taggccttttttgatggtaaaatcaatcctcgtaaacacaacattc 15506769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 25663208 - 25663175
Alignment:
Q  195 caatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||||||| |||||||||||||||||||    
T  25663208 caatcctcgtaaactcaacattcatggacctagg 25663175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 37873839 - 37873782
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctag 227  Q
    ||||||||||||| ||  | |||| |||||||| |||||||||||||||| |||||||    
T  37873839 gctaggccttttttgatagcaaaatcaatcctcttaaacacaacattcatagacctag 37873782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 38815143 - 38815258
Alignment:
Q  113 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaa 212  Q
    |||||||||| || |  |||||||||||  |||||||||| || || |||| | |  |||| ||||||||||| || |||| ||||||||||||||||||    
T  38815143 tatatatcaaggattgcttacacatgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaa 38815242  T
Q  213 cattcatggacctagg 228  Q
    ||||||||||||||||    
T  38815243 cattcatggacctagg 38815258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 3187882 - 3187934
Alignment:
Q  176 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||| || |||| |||| |||||||||||||||||||||||||||||    
T  3187882 cctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctagg 3187934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 39434573 - 39434625
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatgga 222  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||||||||||    
T  39434573 gctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatgga 39434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 4699782 - 4699835
Alignment:
Q  175 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||||||||| || ||||  |||||| ||||||||||||||||||||||||||    
T  4699782 gcctttttggatggcaaaactaatccttgtaaacacaacattcatggacctagg 4699835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 500153 - 500201
Alignment:
Q  175 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggac 223  Q
    ||||||||| | || |||| |||||||||||||||||||||||||||||    
T  500153 gcctttttgaatggtaaaatcaatcctcgtaaacacaacattcatggac 500201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 8882276 - 8882308
Alignment:
Q  196 aatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||||||||||||||||||||||||||    
T  8882276 aatcctcgtaaacacaacattcatggacctagg 8882308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 22589537 - 22589481
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 226  Q
    ||||| |||||||||| || |||| |||||||||| |||||||||||||| ||||||    
T  22589537 gctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatagaccta 22589481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 4073397 - 4073488
Alignment:
Q  127 taattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattca 218  Q
    |||||||||||||  ||||||||||| || || |||  |||| |||| || |||||||| |  |||| |||| |||||||||||||||||||    
T  4073397 taattacacatgattggaaggcaagcgggaaacaagttgtgtcgctaagcttttttggatgataaaatcaattctcgtaaacacaacattca 4073488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 24451047 - 24451084
Alignment:
Q  191 aaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  24451047 aaaacaatcatcgtgaacacaacattcatggacctagg 24451084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 18804479 - 18804563
Alignment:
Q  130 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaaca 214  Q
    |||||| ||||  ||||||||||||| || |||| | |  ||||| |||||||||| || |||| ||||||||||||||| ||||    
T  18804479 ttacacttgaatagaaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacaaaaca 18804563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 103012 - 103070
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  103012 gctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 103070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 3137448 - 3137390
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  3137448 gctaagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 3137390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 959489 - 959545
Alignment:
Q  172 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||||||||| || |  |||| ||||||||||||||||||||||||||||||||||    
T  959489 taggcctttttagatgacaaaatcaatcctcgtaaacacaacattcatggacctagg 959545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 34168770 - 34168884
Alignment:
Q  113 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaa 212  Q
    ||||||| ||||| ||||||||||||||  |||||||||| ||  | |||  | |  ||||||||||||||||  | |||| |||||||||| |||||||    
T  34168770 tatatataaatgattaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggcctttttggatagcaaaaccaatcctcgt-aacacaa 34168868  T
Q  213 cattcatggacctagg 228  Q
    |||||||||| |||||    
T  34168869 cattcatggatctagg 34168884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 7749387 - 7749441
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacc 224  Q
    ||||| |||||| ||| || |||| ||||||||||||||||||||||||||||||    
T  7749387 gctagaccttttaggatggcaaaaccaatcctcgtaaacacaacattcatggacc 7749441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 17249506 - 17249456
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 220  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||||||||    
T  17249506 gctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatg 17249456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 29338280 - 29338222
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||| |||||||  | |||| ||||||| ||||||||||||||||||||||||||    
T  29338280 gctaggccattttggatagaaaaatcaatccttgtaaacacaacattcatggacctagg 29338222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 32115644 - 32115682
Alignment:
Q  190 aaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  32115644 aaaatcaatcatcgtaaacacaacattcatggacctagg 32115682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 34554476 - 34554427
Alignment:
Q  171 ctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 220  Q
    ||||||||||||||| |  |||| |||||||||||||||||| |||||||    
T  34554476 ctaggcctttttggatgacaaaatcaatcctcgtaaacacaaaattcatg 34554427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 357891 - 357859
Alignment:
Q  196 aatcctcgtaaacacaacattcatggacctagg 228  Q
    |||| ||||||||||||||||||||||||||||    
T  357891 aatcttcgtaaacacaacattcatggacctagg 357859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 26772624 - 26772722
Alignment:
Q  130 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||||  | |||||||| || || |||| | |  ||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  26772624 ttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggacctagg 26772722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 32546701 - 32546759
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||| || |||| |||||||||| |||||||||||||||||||||||    
T  32546701 gctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatggacctagg 32546759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 13582389 - 13582474
Alignment:
Q  143 gaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||| || || || ||| || |||||||||||||||| ||  ||| ||||| ||||||||||||||||||||| ||||||    
T  13582389 gaaggcaagcgggcaataaacagcgtcgctaggcctttttggatggctaaatcaatcttcgtaaacacaacattcatggtcctagg 13582474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 39583430 - 39583372
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||| || |||| |||||||||||||||| ||||||||| |||||||    
T  39583430 gctagacctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaacctagg 39583372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 26276528 - 26276577
Alignment:
Q  177 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 226  Q
    ||||||||| || |||| |||||||| |||||||||||||||||||||||    
T  26276528 ctttttggatggcaaaatcaatcctcataaacacaacattcatggaccta 26276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 53785621 - 53785673
Alignment:
Q  176 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||| ||||| || |||| ||||||||||||||| ||||||||||||||||||    
T  53785621 ccttgttggatggcaaaaccaatcctcgtaaacataacattcatggacctagg 53785673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 26856963 - 26856905
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||||||||| || |||| ||||||||| || ||||||||||||  |||||||    
T  26856963 gctaggcctttttggatggtaaaaccaatcctcgcaagcacaacattcataaacctagg 26856905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 38671061 - 38671023
Alignment:
Q  190 aaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  38671061 aaaaccaatcctcgtacacacaacattcatggacctagg 38671023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 44198614 - 44198731
Alignment:
Q  111 tgtatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacac 210  Q
    ||||||||| ||| | || |||||| ||||  |||||||||| |  || |||| |||| |||   |||||||||| || |||| ||||  ||| ||||||    
T  44198614 tgtatatataaattattatttacacttgaatagaaggcaagcggacaacaagctgtgtcgctcaacctttttggatggcaaaatcaattatcgcaaacac 44198713  T
Q  211 aacattcatggacctagg 228  Q
    ||||||||||||||||||    
T  44198714 aacattcatggacctagg 44198731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 49017880 - 49017929
Alignment:
Q  177 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 226  Q
    ||||||||| || |||| |||||||| |||||||||||||||| ||||||    
T  49017880 ctttttggatggcaaaatcaatcctcataaacacaacattcattgaccta 49017929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 4763967 - 4763939
Alignment:
Q  196 aatcctcgtaaacacaacattcatggacc 224  Q
    |||||||||||||||||||||||||||||    
T  4763967 aatcctcgtaaacacaacattcatggacc 4763939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 5338551 - 5338599
Alignment:
Q  169 agctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattc 217  Q
    |||||| || ||||||| || |||| |||||||||||||||||||||||    
T  5338551 agctagaccattttggatggcaaaaccaatcctcgtaaacacaacattc 5338599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 48539094 - 48539145
Alignment:
Q  177 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  48539094 ctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 48539145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 45614043 - 45613985
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||| ||| || |||| ||||||||||||||||||||||||||||||||||    
T  45614043 gctagaccttttcggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 45613985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 982828 - 982908
Alignment:
Q  143 gaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggac 223  Q
    |||||||| |||| || |||| |||| ||||| |||||||||| || || | |||||||||| ||||||||||||||||||    
T  982828 gaaggcaaacaggcaacaagctgtgtcgctagacctttttggatggcaataccaatcctcgtgaacacaacattcatggac 982908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 21327033 - 21326981
Alignment:
Q  176 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||| || |||| |||||||||| |||||||||||||||||||||||    
T  21327033 cctttttggatggcaaaatcaatcctcgtgaacacaacattcatggacctagg 21326981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 28517498 - 28517430
Alignment:
Q  160 aagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||| |||| ||||| | |||||||| || |||| ||||||||||||||||||||||||||||| ||||    
T  28517498 aagctgtgtcgctagacttttttggatggcaaaaccaatcctcgtaaacacaacattcatggacttagg 28517430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 45003098 - 45003042
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 226  Q
    ||||| |||||||||| || |||| ||||| ||||||||||||||||||||| ||||    
T  45003098 gctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatggtccta 45003042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 27027824 - 27027773
Alignment:
Q  177 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||  | |||| |||||||||| |||||||||||||||||||||||    
T  27027824 ctttttggatagcaaaaccaatcctcgtgaacacaacattcatggacctagg 27027773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 38839240 - 38839287
Alignment:
Q  178 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacct 225  Q
    |||||||| || |||| ||||| |||||||||||||||||||||||||    
T  38839240 tttttggatggtaaaaccaatcttcgtaaacacaacattcatggacct 38839287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 5825139 - 5825237
Alignment:
Q  130 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||||  | |||||||||||||| |||| | |  |  || ||||||| || || |||| ||||||||||||||||||||| ||| ||||||||    
T  5825139 ttacacatgaataggaggcaagcaggtaacaagctgcgccgtaagacctttttcgatggcaaaaccaatcctcgtaaacacaacatccatagacctagg 5825237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 40726673 - 40726623
Alignment:
Q  178 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||| || |||| |||||||| ||||||||||||||||||| |||||    
T  40726673 tttttggatggcaaaatcaatcctcataaacacaacattcatggatctagg 40726623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 32584506 - 32584555
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcat 219  Q
    |||||||||||||||| || |||| ||||| | |||||||||||||||||    
T  32584506 gctaggcctttttggatggtaaaatcaatctttgtaaacacaacattcat 32584555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 30688414 - 30688517
Alignment:
Q  121 aatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 220  Q
    ||||| ||||||||||||||  || ||||||| || || |||| | |  ||||||||||||||||    |||| ||||||||||||||||||||||||||    
T  30688414 aatgattaattacacatgaatagatggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaacacaacattcatg 30688513  T
Q  221 gacc 224  Q
    ||||    
T  30688514 gacc 30688517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 24177712 - 24177654
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||  || |||| |||||||||| |||||||||||||||||||||||    
T  24177712 gctagacctttttggttggcaaaaccaatcctcgtgaacacaacattcatggacctagg 24177654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 34644480 - 34644530
Alignment:
Q  178 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||| || |||| ||||| ||||||||||||||||||||||||||||    
T  34644480 tttttggatggcaaaatcaatcatcgtaaacacaacattcatggacctagg 34644530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 45835380 - 45835330
Alignment:
Q  177 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctag 227  Q
    ||||||||| || |||| ||||||||||||||||||||||||| |||||||    
T  45835380 ctttttggatggcaaaatcaatcctcgtaaacacaacattcatagacctag 45835330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 5453961 - 5454057
Alignment:
Q  130 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 226  Q
    |||||||||||  | |||||||| || || |||| | |  ||||| |||||||||| |  |||| ||||||| ||||||||||||||||||||||||    
T  5453961 ttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacacaacattcatggaccta 5454057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 28493532 - 28493477
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacct 225  Q
    ||||| |||||||||| || |||| |||||||||| |||| |||||||||||||||    
T  28493532 gctagacctttttggatggcaaaatcaatcctcgtgaacataacattcatggacct 28493477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 2764391 - 2764441
Alignment:
Q  176 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 226  Q
    |||||||||| || |||| ||||| |||||||||||||||| |||||||||    
T  2764391 cctttttggatggtaaaatcaatcatcgtaaacacaacatttatggaccta 2764441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 2898608 - 2898658
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 220  Q
    |||| ||||||||||| || |||| |||||||| |||||||||||||||||    
T  2898608 gctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcatg 2898658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 1114063 - 1114023
Alignment:
Q  176 cctttttggacgggaaaaacaatcctcgtaaacacaacatt 216  Q
    |||||||||| || |||| ||||||||||||||||||||||    
T  1114063 cctttttggatggcaaaaccaatcctcgtaaacacaacatt 1114023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 10348672 - 10348636
Alignment:
Q  115 tatatcaatgactaattacacatgaacggaaggcaag 151  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  10348672 tatatcaatgactaattacacatgaatggaagacaag 10348636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 39001303 - 39001361
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||| |  |||| ||||||||||||||||||||||||||||||||||    
T  39001303 gctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacctagg 39001361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 53619492 - 53619548
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 226  Q
    ||||| |||||||||| || |||| |||| |||||||||||||||||||||||||||    
T  53619492 gctagacctttttggatggcaaaaccaattctcgtaaacacaacattcatggaccta 53619548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 3329902 - 3329960
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||| || |||| ||||| ||||||||||| ||||||||||||||||    
T  3329902 gctagacctttttggatggcaaaaccaatcatcgtaaacacagcattcatggacctagg 3329960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 4419177 - 4419227
Alignment:
Q  178 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||| || |||| ||||| ||||||||||||||||||||||||||||    
T  4419177 tttttggatggcaaaaccaatcatcgtaaacacaacattcatggacctagg 4419227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 30940973 - 30940875
Alignment:
Q  130 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||| ||||  |||||||||| || || |||| | || ||||| |||||||||| || |||| |||||||| | |||||||||||||| ||||||||    
T  30940973 ttacacttgaatagaaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatagacctagg 30940875  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 48657109 - 48657060
Alignment:
Q  177 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 226  Q
    |||||||||||| |||| ||||| ||||||||||||||||||| ||||||    
T  48657109 ctttttggacggcaaaatcaatcatcgtaaacacaacattcatagaccta 48657060  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 26521338 - 26521452
Alignment:
Q  113 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaa 212  Q
    |||||||||| || || ||||||||| |  |||||||||| |  ||||||| |||  ||||  |||||||||| |  |||| ||||||||||||||||||    
T  26521338 tatatatcaaggattacttacacatggatagaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaaccaatcctcgtaaacacaa 26521437  T
Q  213 cattcatggacctagg 228  Q
    || |||||| ||||||    
T  26521438 ca-tcatgggcctagg 26521452  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 45661599 - 45661653
Alignment:
Q  172 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 226  Q
    |||| |||||||||  | |||| |||||||||||||||||| |||||||||||||    
T  45661599 taggtctttttggatagtaaaaccaatcctcgtaaacacaatattcatggaccta 45661653  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 55933653 - 55933603
Alignment:
Q  178 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||| || |||| ||||| |||||||||||||||||| |||||||||    
T  55933653 tttttggatggcaaaatcaatcatcgtaaacacaacattcacggacctagg 55933603  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 16955391 - 16955424
Alignment:
Q  195 caatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||||||||||||||||||||||||| ||||||    
T  16955391 caatcctcgtaaacacaacattcatgggcctagg 16955424  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 50464497 - 50464448
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcat 219  Q
    |||||| ||||||||| || ||||  ||||||||||||||||||||||||    
T  50464497 gctaggtctttttggatggcaaaataaatcctcgtaaacacaacattcat 50464448  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 18981714 - 18981682
Alignment:
Q  195 caatcctcgtaaacacaacattcatggacctag 227  Q
    ||||| |||||||||||||||||||||||||||    
T  18981714 caatcatcgtaaacacaacattcatggacctag 18981682  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 50442674 - 50442622
Alignment:
Q  176 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||| || |||| |||||||| |||||||||||| |||| |||||||    
T  50442674 cctttttggatggcaaaaccaatcctcttaaacacaacatccatgaacctagg 50442622  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 13413259 - 13413315
Alignment:
Q  172 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    |||||||||||||| || |||| |||| ||| |||||||||||||||||||||||||    
T  13413259 taggcctttttggatggcaaaaccaattctcataaacacaacattcatggacctagg 13413315  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 17344550 - 17344602
Alignment:
Q  176 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||||||||  | |||| ||||||||||||||||||||||||||||||||||    
T  17344550 cctttttggatcgaaaaatcaatcctcgtaaacacaacattcatggacctagg 17344602  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 4413267 - 4413209
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||| || |||| |||||||| | |||||||||||||||||||||||    
T  4413267 gctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatggacctagg 4413209  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 9685616 - 9685558
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||| || |||||||||| | || |||||||||||||||||||||||    
T  9685616 gctagacctttttggatggcaaaaacaatctttgtgaacacaacattcatggacctagg 9685558  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 30602338 - 30602430
Alignment:
Q  113 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgta 205  Q
    |||||||||| || ||||||||||||||  ||||||| || || || |||| | |  |||||||||||||||| || |||| |||||||||||    
T  30602338 tatatatcaaggattaattacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatcctcgta 30602430  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 225
Target Start/End: Complemental strand, 41868089 - 41868054
Alignment:
Q  190 aaaaacaatcctcgtaaacacaacattcatggacct 225  Q
    |||| |||||||||||||||||||||||||||||||    
T  41868089 aaaaccaatcctcgtaaacacaacattcatggacct 41868054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 18745155 - 18745097
Alignment:
Q  170 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||| |||||||||| || |||| |||||||  |||||||||||||||| ||||||||    
T  18745155 gctagacctttttggatggcaaaaccaatccttataaacacaacattcatagacctagg 18745097  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 44686348 - 44686380
Alignment:
Q  196 aatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||||||||||||||||||||| |||||||||    
T  44686348 aatcctcgtaaacacaacattcacggacctagg 44686380  T

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Target: scaffold0148 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 33161 - 33214
Alignment:
Q  175 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 228  Q
    ||||||||||| |  |||| |||||||||||||||| || ||||||||||||||    
T  33161 gcctttttggatgacaaaatcaatcctcgtaaacacgacgttcatggacctagg 33214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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