View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14427_low_18 (Length: 289)
Name: NF14427_low_18
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 27404202 - 27404468
Alignment:
| Q |
18 |
gcctttaaacatggaagacatgagacatgcaaagaataaggttgttgaactttaaacactgttcacttcaattgatttagtgttatggcttgtttattac |
117 |
Q |
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| T |
27404202 |
gcctttaaacatggaagacatgagacatgcaaagaataaggttgttgaactttaaacactgttcacttcaattgatttagtgttatgacttgtttattac |
27404301 |
T |
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| Q |
118 |
gggcataagaacttctgaacttgtatgggacccacccaccatctccctacaatgttttagcttacttcaataagctcttcaacacagtttgtgaaaactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27404302 |
gggcataagaacttctgaacttgtatgggacccacccaccatctccctacaatgttttagcttacttctataagctcttcaacacagtttgtgaaaactt |
27404401 |
T |
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| Q |
218 |
atagcttatatgacatttggtagcaatagttagcacttaagagcaatcaaacattcacctttgattc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
27404402 |
atagcttatatgacatttggtagcaatagttagcactaatgagcaatcaaacattcacctttgattc |
27404468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 45989814 - 45989855
Alignment:
| Q |
18 |
gcctttaaacatggaagacatgagacatgcaaagaataaggt |
59 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||| |
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| T |
45989814 |
gcctttgaacatggaagacatgagacaggcaaagaataaggt |
45989855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 44936435 - 44936476
Alignment:
| Q |
18 |
gcctttaaacatggaagacatgagacatgcaaagaataaggt |
59 |
Q |
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||||||||||||||| ||||||||| | |||||||||||||| |
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| T |
44936435 |
gcctttaaacatggaggacatgagagaggcaaagaataaggt |
44936476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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