View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14427_low_20 (Length: 268)
Name: NF14427_low_20
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 36544005 - 36544200
Alignment:
| Q |
1 |
ttgtcgaagtaagcaaaa-aacctttaataatatatattttaatatcctattgagataaagtgaaatctttggtaacatgcaaatatctttaagactctt |
99 |
Q |
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| T |
36544005 |
ttgtcgaaggaagcaaaaaaacctttaataacatatattttaatacccttttgagataaagtgaaatctttggtaacatgcaaatatctttaagactctt |
36544104 |
T |
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| Q |
100 |
tttggattaatggaaataagcagaatataaatgaacgaaatggaatataacatattttgattccattatattgtttgaggattttataatgaaata |
195 |
Q |
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| T |
36544105 |
tttggattaatggaaataagcagaatataaatgatcgaaatggaatataacatattttgattccattatattgtttgagtattttataatgtaata |
36544200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 36544229 - 36544257
Alignment:
| Q |
191 |
aaataaatggaataaaatgagttacaata |
219 |
Q |
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| T |
36544229 |
aaataaatggaataaaatgagttacaata |
36544257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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