View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14427_low_24 (Length: 206)
Name: NF14427_low_24
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 48011957 - 48011782
Alignment:
| Q |
14 |
cataggtggaactgaagggtactatggaaaccaacacaaagacaaaagagtcacaaatgagtattctgaagaaggggtggaagatttgtctatggtttct |
113 |
Q |
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| T |
48011957 |
cataggtggaactgaagggtactatggaaaccaacacaaagacaaaagagtcacaaatgagtattctgaagaaggggtggaagatttgtctatggtttct |
48011858 |
T |
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| Q |
114 |
gatgcttcttctggtcctccacatcttccatatgatgacgatgtttacttcaatgagaaagacaatgtagtgaaaa |
189 |
Q |
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| T |
48011857 |
gatgcttcttctggtcctccacatcttccatatgatgacgatgtttacttcaatgagaaagacaatgtagtgaaaa |
48011782 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 336498 - 336535
Alignment:
| Q |
99 |
ttgtctatggtttctgatgcttcttctggtcctccaca |
136 |
Q |
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| T |
336498 |
ttgtccatggtttctgatgcttcttctggtcctccaca |
336535 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 47592039 - 47592082
Alignment:
| Q |
93 |
gaagatttgtctatggtttctgatgcttcttctggtcctccaca |
136 |
Q |
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| T |
47592039 |
gaagatttatccatggtttctgatgcttcttctggacctccaca |
47592082 |
T |
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