View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14427_low_4 (Length: 481)
Name: NF14427_low_4
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 487842 - 488294
Alignment:
| Q |
19 |
agaaacactttcaattcaaagtattggtgctacaatatataccataaaataaatgaaaaacactgatatacaatctccaaacaacttactttgccgattt |
118 |
Q |
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| T |
487842 |
agaaacactttcaattcaaagtattggtgctacaatatataccataaaataaatgaaaaacactgatatacaatctccaaacaacttactttgccgattt |
487941 |
T |
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| Q |
119 |
ctgagaaagcacaagtagcaaatgaaaattattatgaccaagcctaccccaactgcaatgactgtaatcatccatattttgcttgaattatctgcacaaa |
218 |
Q |
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| T |
487942 |
ctgagaaagcacaagtagcaaatgaaaattattatgaccaagcctaccccaactgcaatgactgtaatcatccatattttgcttgaattatctgcacaaa |
488041 |
T |
|
| Q |
219 |
agatcaatcaaaactagctttgacagaatgtttaagaattgtattgcaacttgagaaatgcttacttttccctcctaggttggtagaagactttgtttgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488042 |
agatcaatcaaaactagctttgacagaatgtttaagaattgtattgcaacttgagaaatgcttacttttccctcctaggttggtagaagactttgtttgt |
488141 |
T |
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| Q |
319 |
tctttttcaccaagataaaatggatagaattcatatctcagataacagctacgactcataactctcgcaccaatggaggcataacagcaacctggtatat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488142 |
tctttttcaccaagataaaatggatagaattcatatctcagataacagctgcgactcataactctcgcaccaatggaggcataacagcaacctggtatat |
488241 |
T |
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| Q |
419 |
ctccaatagcacttagtagacacctactgcaatcattagctgctagatctctg |
471 |
Q |
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| T |
488242 |
ctccaatagcacttagtagacacctactgcaatcattagctgctagatctctg |
488294 |
T |
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