View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14427_low_8 (Length: 380)
Name: NF14427_low_8
Description: NF14427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14427_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 107 - 363
Target Start/End: Complemental strand, 582492 - 582236
Alignment:
| Q |
107 |
tgtaaccaaggcttccgtgaaacatgttcctcatgcaaacctcctactcaccatgtcacacacactcgtgtcaacacaccaacatcttcaccgttgtata |
206 |
Q |
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| T |
582492 |
tgtaaccaaggcttccgtgaaacatgttcctcatgcaaacctcctactcaccatgtcacacacactcgtgtcaacacaccaacatcttcaccgttgtata |
582393 |
T |
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| Q |
207 |
aaatcaaaccttcacacatacactaatattatagtctcttacattcattctccaagaaatcaaaaccttgttttattttccacgagcatactcaaaaatg |
306 |
Q |
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| T |
582392 |
aaatcaaaccttcacacatacactaatattatagtctcttacattcattctccaagaaatcaaaaccttgttttattttccacgagcatactcaaaaatg |
582293 |
T |
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| Q |
307 |
gcacaacctcaagttcaagtccacacaacagcaacaacccgtacttatgaaactggt |
363 |
Q |
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| T |
582292 |
gcacaacctcaagttcaagtccacacaacagcaacaacccgtacttatgaaactggt |
582236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 167
Target Start/End: Complemental strand, 12344226 - 12344186
Alignment:
| Q |
128 |
acatgttcctcatgcaaacctcc-tactcaccatgtcacac |
167 |
Q |
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| T |
12344226 |
acatgttcctcatgcaaacctccttactcactatgtcacac |
12344186 |
T |
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