View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14428_high_11 (Length: 522)
Name: NF14428_high_11
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 22 - 505
Target Start/End: Original strand, 52087232 - 52087703
Alignment:
| Q |
22 |
aaaaactgaaagggaaccaatagagaaccctttagctctaccagaagagaaattttccccacaattaaactgaacagctttttcatgttgaattccactt |
121 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52087232 |
aaaaaccgaaagggaaccaatagagaaccctttagctctaccaggagagaaattttccccacaattaaactga------------tgttgaattccactt |
52087319 |
T |
|
| Q |
122 |
atacccttcaacacctcatctttaacttcttctcccaaaccctccttcaacttgaagaacaaaacttgcatagcagatccatgttgtagaaccaagtcgt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52087320 |
atacccttcaacacctcatctttaacttcttctcccaaaccctccttcaacttgaagaacacaacttgcatagcagatccatgttgtagaaccaagtcgt |
52087419 |
T |
|
| Q |
222 |
tatcgtgaacctcggtgacccaattaagagccatggtttcatcaactataggcttgttatctttgatgactgccaagtgtgtagggtgcactgcataggc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52087420 |
tatcgtgaacctcggtgacccaattaagagccatggtttcatcaactataggcttgttatctttgatgactgccaagtgtgtagggtgcactgcataggc |
52087519 |
T |
|
| Q |
322 |
atggagatcttccttggatctgaatctactatggatcatgtgagtgaaattgaaagatgaaatggaattggaggattgaatacttaccaacggacccata |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52087520 |
atggagatcttccttggatctgaatctactatggatcatgtgagtgaaattgaaagatgaaatggaattggaggattgaatacttaccaacggacccata |
52087619 |
T |
|
| Q |
422 |
gtcaagtgaagtggctcttcaagagagataagggaattcacttgcttcaccatggaatcaatcgctgattgtggaacgtcttct |
505 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52087620 |
gttaagtgaagtggctcttcaagagagataagggaattcacttgcttcaccatggaatcaatcgctgattgtggaacgtcttct |
52087703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University