View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_high_12 (Length: 492)
Name: NF14428_high_12
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 36014924 - 36015389
Alignment:
| Q |
18 |
tcaaacactctcatcagaaccaattgcttcatccagaatatttgtaaattgaagagttgaaagaatctgttaagagttatattgagaacgcaaaaatttg |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |
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| T |
36014924 |
tcaaacactctcatcagaaccagttgcttcatccagaatatttgtaaattgaagagttgaaagaatctgtta-gagttatattgagaatgtaaaaatttg |
36015022 |
T |
|
| Q |
118 |
tgcagacagagagtatagacgaaccaaggtgacatttagatacattacatgtttttgggattctcccttagcatctgtaactcgtctgatatattcttgt |
217 |
Q |
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| T |
36015023 |
tgcagacagagagtatagacgaaccaaggtgacatttagatacattatatgtttttcggattctcccttagcatctgtaactcgtctgatatattcttgt |
36015122 |
T |
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| Q |
218 |
aaatttgagctttcctttccccgtgcatgttaaacatatttttgcttttagaactgacttctctgttttatatttggcacacatacaattcattccttca |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36015123 |
aaatttgagctttcctttcctcgtgcatgttaaacatatttttgcttttagaactgacttctctgttttatatttggcacacatacaattcattccttca |
36015222 |
T |
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| Q |
318 |
tatttgccatattaagtacactagaactcaatgcatgcccttatggatatcctattagattatcataataaatattattttcatgataacaccttggtaa |
417 |
Q |
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| T |
36015223 |
tatttgccatattaagtacactagaactcaatgcatgcccttatggatatcctattagattatcataataaatattattttcatgataacaccttggtaa |
36015322 |
T |
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| Q |
418 |
tgaannnnnnnaggagaaccttggtagtaataactagtaatgattatgttttcttgtgattttcttc |
484 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36015323 |
tgaatttttttaggagaaccttggtagtaataactagtaatgattatgttttcttgtgattttcttc |
36015389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 36013145 - 36013265
Alignment:
| Q |
206 |
atatattcttgtaaatttgagctttcctttcccc-gtgcatgttaaacatatttttgcttttagaactgacttctctgttttatatttggcacacataca |
304 |
Q |
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|||| ||||||||||||||||||| || |||||| |||||| |||| ||||||||||||||||||| ||| |||||| |||| ||||||||||||||||| |
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| T |
36013145 |
atattttcttgtaaatttgagcttccccttccccagtgcatattaa-catatttttgcttttagaattgatttctctatttt-tatttggcacacataca |
36013242 |
T |
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| Q |
305 |
attcattccttcatatttgccat |
327 |
Q |
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||||| ||| ||||||| |||| |
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| T |
36013243 |
tttcatgcctccatattttccat |
36013265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 36012918 - 36012961
Alignment:
| Q |
18 |
tcaaacactctcatcagaaccaattgcttcatccagaatatttg |
61 |
Q |
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||||||||||| |||||||| | ||||||||||||||||||||| |
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| T |
36012918 |
tcaaacactcttatcagaactagttgcttcatccagaatatttg |
36012961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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