View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14428_high_15 (Length: 477)

Name: NF14428_high_15
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14428_high_15
NF14428_high_15
[»] chr4 (2 HSPs)
chr4 (17-460)||(53560978-53561422)
chr4 (240-276)||(42112222-42112258)
[»] chr8 (3 HSPs)
chr8 (57-457)||(4902575-4902976)
chr8 (245-330)||(13959898-13959983)
chr8 (240-276)||(44683335-44683371)
[»] chr7 (1 HSPs)
chr7 (240-333)||(22196065-22196158)
[»] chr3 (3 HSPs)
chr3 (245-330)||(47326722-47326807)
chr3 (108-154)||(21943340-21943386)
chr3 (242-278)||(28570686-28570722)
[»] chr6 (1 HSPs)
chr6 (240-333)||(20793418-20793511)
[»] chr5 (1 HSPs)
chr5 (248-296)||(10429422-10429470)
[»] chr1 (2 HSPs)
chr1 (245-360)||(4864387-4864502)
chr1 (242-326)||(42749862-42749946)


Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Original strand, 53560978 - 53561422
Alignment:
Q  17 aggtagcattccctttagttatttggggttaccagttggagcgaatccgggaagagtggcaacttgggatcct-ttttgcgattcctaacaaatagattg 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  53560978 aggtagccttccctttagttatttggggttaccagttggagcgaatccgggaagagtggcaacttgggatcctcttttgtgattcctaacaaatagattg 53561077  T
Q  116 aatagttgggggaataagttcataagtcttggtggtagagtggtgcttctcaattcggtgttgaatttcattcctatttattacttgtcctttatgagaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  53561078 aatagttgggggaataagttcataagtcttggtggtagagtggtgcttctcaattcggtgttgaattccatttctatttattacttgtcctttatgagaa 53561177  T
Q  216 tgccatctaaagtccggcggaatttggtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53561178 tgccatctaaagtccggcggaatttggtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggtgaagtggaaggt 53561277  T
Q  316 ggtgtgtcaaccgaaagataatggaggcttgggggtgagagatgtcaatgttgttaacttaagccttctagcgaaatggaggtggaggatgttgcaaaaa 415  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53561278 ggtgtgtcaaccgaaagataatggaggcttgggggtgagggatgtcaatattgttaacttaagccttctagcgaaatggaggtggaggatgttgcaaaaa 53561377  T
Q  416 ggtggctccatgtggaaggatgttttaagggagaaatatggtgag 460  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  53561378 ggtggctccatgtggaaggatgttttgagggagaaatatggtgag 53561422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 42112258 - 42112222
Alignment:
Q  240 tggtgagaattcaaagggaattcctttggggaggtgt 276  Q
    |||||||||||||||| |||||||| |||||||||||    
T  42112258 tggtgagaattcaaagagaattcctatggggaggtgt 42112222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 57 - 457
Target Start/End: Original strand, 4902575 - 4902976
Alignment:
Q  57 gcgaatccgggaagagtggcaacttgggatcctttttgcgat-tcctaacaaatagattgaatagttgggggaataagttcataagtcttggtggtagag 155  Q
    |||||||||||||||||||| |||||||| ||||| |   || | |||||||||||||||  ||||||||||||||| ||||| || |||||||| ||||    
T  4902575 gcgaatccgggaagagtggccacttgggaacctttgttgaatcttctaacaaatagattgtttagttgggggaataaattcattagccttggtgggagag 4902674  T
Q  156 tggtgcttctcaattcggtgttgaatttcattcctatttattacttgtcctttatgagaatgccatctaaagtccggcggaatttggtgagaattcaaag 255  Q
    ||||||| || |||||||||||||| | ||||||||||||||| ||||| ||||||| |||||| ||||||||  || ||||   |||||||||||||||    
T  4902675 tggtgctgcttaattcggtgttgaactccattcctatttattatttgtcatttatgaaaatgccttctaaagtgtggaggaaagaggtgagaattcaaag 4902774  T
Q  256 ggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaagataatggaggcttgggggtgaga 355  Q
    ||| ||||||||||| ||||||||||| || ||| | |||| || || |||||||||||||||||||||||| ||||   ||||||| |||||||||||     
T  4902775 ggagttcctttggggtggtgtggagggtggtaggggcattaattgggtgaagtggaaggtggtgtgtcaacctaaaggggatggaggtttgggggtgagg 4902874  T
Q  356 gatgtcaatgttgttaacttaagccttctagcgaaatggaggtggaggatgttgcaaaaaggtggctccatgtggaaggatgttttaagggagaaatatg 455  Q
    ||| | |  || || |||||||||||| |||| |||||| |||||||| | |||||  ||||  | ||  | |||||||| ||| | |||||||||||||    
T  4902875 gatattagggtggtgaacttaagccttttagcaaaatggcggtggaggcttttgcatgaagggagttcgttttggaaggaggttcttagggagaaatatg 4902974  T
Q  456 gt 457  Q
    ||    
T  4902975 gt 4902976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 13959983 - 13959898
Alignment:
Q  245 agaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaa 330  Q
    ||||| ||||||||  | |||||||||||||| ||||||||||||| |||||||| ||  || ||||   ||||||||||||||||    
T  13959983 agaatccaaagggagcttctttggggaggtgttgagggagggaggaaaattagttgggttaaatggagtttggtgtgtcaaccgaa 13959898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 44683335 - 44683371
Alignment:
Q  240 tggtgagaattcaaagggaattcctttggggaggtgt 276  Q
    |||||||||||||||| |||||||| |||||||||||    
T  44683335 tggtgagaattcaaagagaattcctatggggaggtgt 44683371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 22196065 - 22196158
Alignment:
Q  240 tggtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaaga 333  Q
    |||| |||||||||||||||||||||||||| ||| | |||||||||||||  ||||||| ||  |  |||||||||||||||| |||||||||    
T  22196065 tggttagaattcaaagggaattcctttggggtggtttagagggagggaggaagattagttgggttagttggaaggtggtgtgtccaccgaaaga 22196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 47326722 - 47326807
Alignment:
Q  245 agaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaa 330  Q
    |||||||||||||| |||||||||||||||| || |||||| |||| |||||| | || ||||||||  |||||||||||||||||    
T  47326722 agaattcaaagggagttcctttggggaggtgcggcgggaggtaggaaaattagatgggtgaagtggagtgtggtgtgtcaaccgaa 47326807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 21943386 - 21943340
Alignment:
Q  108 atagattgaatagttgggggaataagttcataagtcttggtggtaga 154  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||||    
T  21943386 atagattgaataattggggtaataagttcattagtcttggtggtaga 21943340  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 28570686 - 28570722
Alignment:
Q  242 gtgagaattcaaagggaattcctttggggaggtgtgg 278  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28570686 gtgagaattcaaagagaattcctttggggaggtgtgg 28570722  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 20793418 - 20793511
Alignment:
Q  240 tggtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaaga 333  Q
    |||| ||||||||||| ||||| |||||||| ||| | |||||||||||||  ||||||| ||  |  ||||||||||||||||||||||||||    
T  20793418 tggttagaattcaaagagaatttctttggggtggtttagagggagggaggaagattagttgggttagttggaaggtggtgtgtcaaccgaaaga 20793511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 10429422 - 10429470
Alignment:
Q  248 attcaaagggaattcctttggggaggtgtggagggagggaggagaatta 296  Q
    ||||||||||| ||||||||||||||||||| |||||| |||| |||||    
T  10429422 attcaaagggagttcctttggggaggtgtggcgggaggaaggaaaatta 10429470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 360
Target Start/End: Complemental strand, 4864502 - 4864387
Alignment:
Q  245 agaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaagataatggaggct 344  Q
    ||||| ||||| || || |||||||| ||||| | |||||| |||| ||||| || || ||||||||   |||||||||||||||| || |||| |||      
T  4864502 agaatccaaagagagtttctttggggtggtgtagggggaggaaggaaaattaattgggtgaagtggagcttggtgtgtcaaccgaaggaaaatgaaggtc 4864403  T
Q  345 tgggggtgagagatgt 360  Q
    ||||||| ||||||||    
T  4864402 tgggggttagagatgt 4864387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 42749946 - 42749862
Alignment:
Q  242 gtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaac 326  Q
    |||||||||||||| ||||| ||||||||||| ||||  || || ||||  ||||||| || || ||||||| |||| |||||||    
T  42749946 gtgagaattcaaagagaatttctttggggaggagtgggaggtggtaggaagattagttgggtgaggtggaagttggtttgtcaac 42749862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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