View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_high_21 (Length: 401)
Name: NF14428_high_21
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_high_21 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 1596 - 1208
Alignment:
| Q |
16 |
aaatgaatggggcaatttaaaaggtaattgttgaattata--actaaaatattttatatgataatattatgaaaagctacttaatctttttaatcagt-- |
111 |
Q |
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| T |
1596 |
aaatgaatggggcaatttaaaaggtaattgttgaattatataactaaaatattttatatgataatattatgaaaagctacttaatctttttaatcagtgg |
1497 |
T |
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| Q |
112 |
---------------ttgtgaagtgcaccgaacgtttacggaccacaaaggtcttttatctttacatgcgaatgcgcgcacacacatgctaatatgacac |
196 |
Q |
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| T |
1496 |
ctaaaattccgtactttgtgaagtgcaccgaacgtttacggaccacaaaggtcttttatctttacatgcgcatgcgcgcacacacatgctaatatgacac |
1397 |
T |
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| Q |
197 |
gaagttactcattaagaaaaaatgattttgaatgaatcaaaagttgaagtataattaatattaataggtattgatgtcaaattttacaaaattt-aaaca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1396 |
gaagttactcattaagaaaaaatgattttgaatgaatcaaaagttgaagtataattaatattaataggtattgatgtcaaattttacaaaatttaaaaca |
1297 |
T |
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| Q |
296 |
acaataaatgtgtgataaaatgactgataatgttgagatatatatttacgcaggtaaaaaatagtttcaaaaataagatgtgtgtgatg |
384 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1296 |
acaataaatgtgtgataaaatgactgttaatgttgagatatatatttacgcaggtaaaaaatagtttaaaaaataagatgtgtgtgatg |
1208 |
T |
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