View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_high_22 (Length: 401)
Name: NF14428_high_22
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 27569366 - 27569749
Alignment:
| Q |
1 |
cttgtgactcttgatgaaaatctacaagacaaaaccatgtggtggttcgtcagtcgttttctctcagtaaatcccatcatttagcctacacagtaagtag |
100 |
Q |
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| T |
27569366 |
cttgtgactcttgatgaaaatctacaagacaaaaccatgtggtggttcgtcagtcgttttctctcagtaaatcccatcatttagcctacacagtaagtag |
27569465 |
T |
|
| Q |
101 |
taaccattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggcattgtaat |
200 |
Q |
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| T |
27569466 |
taaccattcaattctttagataaggatatcctaacaggaaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggcattgtaat |
27569565 |
T |
|
| Q |
201 |
tgtgcacttgcctatgaggggaaggtgcctcatctataatatcatgcctaagttatgtacttcaaaaaagaatatactttagcaaatttatctttcactt |
300 |
Q |
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| T |
27569566 |
tgtgcacttgcctatgaggggaaggtgcctcatctataatatcatgcctaagttatgtacttcaaaaaagaatatactttagcaaatttatctttcactt |
27569665 |
T |
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| Q |
301 |
tcaccttttgtcctaggaaaaataactgtgttatgcccttgctaggaatcatgtgttactcctacttcgaaatttctcaggata |
384 |
Q |
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| T |
27569666 |
tcaccttttgtcctaggaaaaataactgtgttatgcccttgctaggaatcatgtgttactgctacttcgaaatttctcaggata |
27569749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 27426527 - 27426412
Alignment:
| Q |
94 |
taagtagtaaccattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggca |
193 |
Q |
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| T |
27426527 |
taagtactaaccattcaactctttaaataaggatatcctaacagggaccatggaatgaggcctgtgtcattcagtgaaataattgaccttgttact-gaa |
27426429 |
T |
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| Q |
194 |
ttgtaattgtgcacttg |
210 |
Q |
| |
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|||| |||||||||||| |
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| T |
27426428 |
ttgttattgtgcacttg |
27426412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 27416379 - 27416294
Alignment:
| Q |
92 |
agtaagtagtaaccattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataatt |
177 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||| |||| ||||||| |
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| T |
27416379 |
agtaagtactaaccattcaattctttagataaggatatcctaacaggaaccatataatgaggcctatgtcattcagtgaaataatt |
27416294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 27420906 - 27420821
Alignment:
| Q |
105 |
cattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactg |
190 |
Q |
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| T |
27420906 |
cattcaattctttagataaggatatcctaacaggcaccatagaatgcagcctatgtcattcagtgaaacaattgactttgttactg |
27420821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 27413417 - 27413281
Alignment:
| Q |
96 |
agtagtaaccattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggcatt |
195 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||| || ||||||||||| ||||||||| |||| |
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| T |
27413417 |
agtaataaccattcaattcttaagataaggatatcctaacaggaaccatagaatgaggcccgttatatt-agcagaataattgaccttgttactgtcatt |
27413319 |
T |
|
| Q |
196 |
gtaattgtgcacttgcctatgaggggaaggtgcctcat |
233 |
Q |
| |
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|| |||| ||||||| ||||| ||||| |||||||| |
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| T |
27413318 |
gttcttgttcacttgcttatgaaaggaagctgcctcat |
27413281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27420977 - 27420931
Alignment:
| Q |
1 |
cttgtgactcttgatgaaaatctacaagacaaaaccatgtggtggtt |
47 |
Q |
| |
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|||||| ||||||||||||||||| ||||||| |||||||||||||| |
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| T |
27420977 |
cttgtgtctcttgatgaaaatctataagacaacaccatgtggtggtt |
27420931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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