View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14428_high_26 (Length: 356)

Name: NF14428_high_26
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14428_high_26
NF14428_high_26
[»] chr4 (14 HSPs)
chr4 (15-338)||(6665570-6665893)
chr4 (18-282)||(6647160-6647427)
chr4 (18-275)||(6748944-6749201)
chr4 (18-281)||(6626541-6626804)
chr4 (18-338)||(6592904-6593227)
chr4 (16-338)||(6792470-6792795)
chr4 (18-198)||(6832436-6832616)
chr4 (19-282)||(6769565-6769831)
chr4 (151-282)||(6522345-6522480)
chr4 (20-106)||(6550328-6550414)
chr4 (179-338)||(6541142-6541300)
chr4 (18-338)||(6811918-6812241)
chr4 (20-72)||(6502239-6502291)
chr4 (65-125)||(4322798-4322858)
[»] scaffold0729 (1 HSPs)
scaffold0729 (16-338)||(5834-6159)
[»] chr6 (4 HSPs)
chr6 (141-220)||(5133506-5133585)
chr6 (65-126)||(5075426-5075487)
chr6 (44-125)||(5148655-5148736)
chr6 (67-124)||(5175114-5175171)
[»] chr7 (1 HSPs)
chr7 (44-124)||(36215589-36215669)
[»] chr3 (1 HSPs)
chr3 (146-209)||(32412467-32412530)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 6665570 - 6665893
Alignment:
Q  15 cacagatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6665570 cacagatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatatgagctttttaattgggctgca 6665669  T
Q  115 ttcaaccaagcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6665670 ttcaaccaagcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 6665769  T
Q  215 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaaag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6665770 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaactagtagaagccctagaaaaaag 6665869  T
Q  315 ttttcgatatttgagtgatgaaga 338  Q
    ||||||||||||||||||||||||    
T  6665870 ttttcgatatttgagtgatgaaga 6665893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 6647160 - 6647427
Alignment:
Q  18 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 117  Q
    |||||| ||||| |||||||||||  ||||||||||| |||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||    
T  6647160 agataggcatctactcaaggagcacagagttgaccatatatataaagtgaaagaattggatgaaagtgaatcaattgaactttttaattgggctgcattc 6647259  T
Q  118 aaccaag---catgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 214  Q
    |||||||   ||  ||  | ||||||||||| ||||||||| |||||  |||||||||||| | |||||||||||||||||||| ||   ||||||   |    
T  6647260 aaccaagcaacaacttctcgagaaggttttggtgaactttcaagacaattagttgcttattctaggggattgcctcttgctcttaaagcacttgggggtt 6647359  T
Q  215 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattcca 282  Q
     |||||||||||  ||||||||| |||||||| ||||||||||||| || |||| ||||||| |||||    
T  6647360 ttttgcatggaaaagaagtacttgagtggaaacgtgtgttgaggagtcttgaaacattttcctttcca 6647427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 6748944 - 6749201
Alignment:
Q  18 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 117  Q
    ||||||||| || ||||||||| |||  ||||||||| | ||||||||||||||| |||| |||||||||||| ||| |||||||||||||  ||| |||    
T  6748944 agatagacaactactcaaggagtatgttgttgaccatatctatagagtgaaagaactggacgaaagtgaatcacttgtgctttttaattggagtgccttc 6749043  T
Q  118 aaccaagcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgtatt 217  Q
    |  ||||||  ||     |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||  |||||||  |||||    
T  6749044 aggcaagcaacttcttacgaaggttttgctgaactttcaaaacagatagttgcttattgtgggggattgcctcttgctcttcaatcccttggggagtatt 6749143  T
Q  218 tgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttc 275  Q
    |||||||||| ||||||||| ||||||||||||| ||||| || || |||||||||||    
T  6749144 tgcatggaagggaagtacttgagtggaaaggtgttttgagtagtcttgaaagattttc 6749201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 6626804 - 6626541
Alignment:
Q  18 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 117  Q
    |||||||||||| || | ||||||||||||||||||| |||||| ||||||| |||||||||||||||||||  |||||||||||||||||| |||||||    
T  6626804 agatagacatctacttatggagcatggagttgaccatatatataaagtgaaacaattggaagaaagtgaatcgattgagctttttaattggggtgcattc 6626705  T
Q  118 aaccaagcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgtatt 217  Q
    | |||||||      ||  ||||||||  |||||||||||| ||  |||||||||||| |  ||||||||||||||||||| ||  |||||||  || ||    
T  6626704 agccaagcaacaactcctcaaggttttagtgaactttctaggcaattagttgcttattctaagggattgcctcttgctcttaaagcccttggggagtttt 6626605  T
Q  218 tgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattcc 281  Q
    |||||||||  || | |||| |||||||| ||||||||| ||| || |||||||||||| ||||    
T  6626604 tgcatggaaaggacgcacttgagtggaaacgtgtgttgaagagtcttgaaagattttcctttcc 6626541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 6593227 - 6592904
Alignment:
Q  18 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 117  Q
    |||||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||||| || |  |||||||||  |||||||||    
T  6593227 agatagacatctactcaagaagcatggaattgaccatatatatagagtgaaagaattggatgaaagtgaatcacttaaagtttttaatttagctgcattc 6593128  T
Q  118 aaccaag---catgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 214  Q
    | |||||   ||  |   | ||||| ||||  |||||||||||||||| |||||||||||| | |||||||||||||||||||| ||   |||||||| |    
T  6593127 agccaagcaacaactccacaagaagattttagtgaactttctagacagctagttgcttattctaggggattgcctcttgctcttaaagaacttgggttct 6593028  T
Q  215 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaaag 314  Q
     |||| |||||   |||| ||||||||||||   |||||||| ||| ||| ||||| ||||||||||| ||  || || |  |||||| || ||||| ||    
T  6593027 ttttgaatggagaggaagcacttaagtggaagaatgtgttgaagagtctcaaaagactttccattccagctccacgactacaagaagctcttgaaaagag 6592928  T
Q  315 ttttcgatatttgagtgatgaaga 338  Q
    |||| |  ||||||||||||||||    
T  6592927 ttttagtgatttgagtgatgaaga 6592904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 6792470 - 6792795
Alignment:
Q  16 acagatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcat 115  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| | || |||||||||||  |||||||||| |||   | ||  |    
T  6792470 acagatagacatctactcaaagagcatggagttgaccatatatatagagtgaaagaactagacgaaagtgaatcgcttgagcttttgaatcaaggtgtgt 6792569  T
Q  116 tcaaccaagcatgtttgcc---agaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggtt 212  Q
    ||  |||||||      ||   ||||| ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||| | || ||   ||||||      
T  6792570 tcggccaagcaacagctcctcaagaagattttggtgaactttctagacaagtagttgcttattctgggggactgcctcttggtgttaaagaacttgggaa 6792669  T
Q  213 gtatttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaa 312  Q
    || |||||||||||   | |||| | |||||||  |||||||||  || ||| ||||||||||||||||  ||  ||||| | ||||||| ||||||||     
T  6792670 gtttttgcatggaaaaaatgtacgtgagtggaagagtgtgttgaaaagtctccaaagattttccattcctgctctacaactactagaagctctagaaaag 6792769  T
Q  313 agttttcgatatttgagtgatgaaga 338  Q
    |||||| |  ||||||||||||||||    
T  6792770 agttttagtgatttgagtgatgaaga 6792795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 6832436 - 6832616
Alignment:
Q  18 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 117  Q
    |||||||||||| |||||| | |||||||||||| || | ||  |||||||| || |||| |||||||||||  ||||||||||||||| || |||||||    
T  6832436 agatagacatctactcaagaaacatggagttgactatatctacggagtgaaacaactggacgaaagtgaatcgcttgagctttttaatttgggtgcattc 6832535  T
Q  118 aaccaagcatgtt-tgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctctt 198  Q
    |  ||||||  || ||  | ||| ||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  6832536 agacaagcaacttctggta-aagattttgttgaactttcgagacaagtagttgcttattctgggggattgcctcttgctctt 6832616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 6769565 - 6769831
Alignment:
Q  19 gatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattca 118  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||||||||  ||||  ||||||||||  |||| ||||| |||||   ||||||||    
T  6769565 gatagacatctactcaaggagcatggagttgaccatatttatagagtgaaagagctggataaaagtgaatcgcttgatcttttgaattgcagtgcattca 6769664  T
Q  119 acca---agcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgta 215  Q
     |||   | || ||   ||||||| ||||| ||| || || ||||||  ||||||||||| | |||||| ||||||||||||| ||   ||||||  ||     
T  6769665 gccaaacaacacgtcctccagaagattttgttgatctatccagacagagagttgcttattctaggggatggcctcttgctcttaaagctcttgggaggtt 6769764  T
Q  216 tttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattcca 282  Q
    |||||||||||   |||||||| ||||||| ||| | ||||| ||  | |||| |||||||||||||    
T  6769765 tttgcatggaaagaaagtacttgagtggaagggtatattgagcagtattgaaaaattttccattcca 6769831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 282
Target Start/End: Complemental strand, 6522480 - 6522345
Alignment:
Q  151 ctttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgtatttgcatggaagtgaagta----cttaagtggaaa 246  Q
    |||||||||||  ||||  |||||| |||||||||||||||||||||||||   ||||||| || |||||||||||  ||  ||    ||| ||||||||    
T  6522480 ctttctagacatttagtcacttattctgggggattgcctcttgctcttgaagaacttgggtcgtttttgcatggaaaagacatatatacttgagtggaaa 6522381  T
Q  247 ggtgtgttgaggagcctcgaaagattttccattcca 282  Q
    |||||||||||||| |||||||||||||||||||||    
T  6522380 ggtgtgttgaggagtctcgaaagattttccattcca 6522345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 6550414 - 6550328
Alignment:
Q  20 atagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaatt 106  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||| ||||||||||| | |||||||||  |||||||||||||||    
T  6550414 atagacatctcctcaaggagcatggatttgaccatatatatagagtcaaagaattggacggaagtgaatcgcttgagctttttaatt 6550328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 338
Target Start/End: Complemental strand, 6541300 - 6541142
Alignment:
Q  179 ggggattgcctcttgctcttgaactccttgggttgtatttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccat 278  Q
    ||||||||||||||||||| |||   |||||||||| |||| ||||||| |||| |||| |||| ||   |||||||| ||| ||||||||| |||||||    
T  6541300 ggggattgcctcttgctctggaagaacttgggttgtttttgaatggaag-gaagcacttcagtgtaagaatgtgttgaagagtctcgaaagactttccat 6541202  T
Q  279 tccatctggacaacaagtagaagccctagaaaaaagttttcgatatttgagtgatgaaga 338  Q
    |||| ||  || || |  |||||| |||||||| |||||| |  ||||||||||||||||    
T  6541201 tccagctccacgactacaagaagctctagaaaagagttttagggatttgagtgatgaaga 6541142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 6811918 - 6812241
Alignment:
Q  18 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 117  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||| | ||  | | ||| ||| ||||| |||| ||  ||| |||||||    
T  6811918 agatagacatctactcaaggagcatggagtggaccatatatatagggtgaaagaacttgacaacactgagtcacttgaggttttgaaccggggtgcattc 6812017  T
Q  118 aaccaag---catgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 214  Q
    | ||| |   ||  |   ||||||| ||||| ||||||||  ||| ||||| || | |||| |||||||||||||||||||||| ||   ||| ||        
T  6812018 agccaggctacaattactccagaagattttgttgaactttgcagagaggtaatttcatattctgggggattgcctcttgctcttcaaaatcttcggacaa 6812117  T
Q  215 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaaag 314  Q
     |||||||||||  |||| || | ||||||  | | |||||||||| || |||||||| |||||||||| |  ||||| | | ||||| ||||| || ||    
T  6812118 ttttgcatggaaaagaagcacgtcagtggatggatatgttgaggagtctggaaagattgtccattccatttccacaactacttgaagctctagagaagag 6812217  T
Q  315 ttttcgatatttgagtgatgaaga 338  Q
    |||||   ||||||||||||||||    
T  6812218 ttttcatgatttgagtgatgaaga 6812241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 6502291 - 6502239
Alignment:
Q  20 atagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaa 72  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  6502291 atagacatctgctcaaggagcatggagttgaccatatacatagagtgaaagaa 6502239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 4322858 - 4322798
Alignment:
Q  65 tgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaagc 125  Q
    |||||||| |||| |||||||||||  |||||||||||| ||||  ||||||||| |||||    
T  4322858 tgaaagaaatggatgaaagtgaatctcttgagctttttagttggcatgcattcaagcaagc 4322798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 6159 - 5834
Alignment:
Q  16 acagatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcat 115  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| | || |||||||||||  |||||||||| |||   | ||  |    
T  6159 acagatagacatctactcaaagagcatggagttgaccatatatatagagtgaaagaactagacgaaagtgaatcgcttgagcttttgaatcaaggtgtgt 6060  T
Q  116 tcaaccaagcatgtttgcc---agaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggtt 212  Q
    ||  |||||||      ||   ||||| ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||| | || ||   ||||||      
T  6059 tcggccaagcaacagctcctcaagaagattttggtgaactttctagacaagtagttgcttattctgggggactgcctcttggtgttaaagaacttgggaa 5960  T
Q  213 gtatttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaa 312  Q
    || |||||||||||   | |||| | |||||||  |||||||||  || ||| ||||||||||||||||  ||  ||||| | ||||||| ||||||||     
T  5959 gtttttgcatggaaaaaatgtacgtgagtggaagagtgtgttgaaaagtctccaaagattttccattcctgctctacaactactagaagctctagaaaag 5860  T
Q  313 agttttcgatatttgagtgatgaaga 338  Q
    |||||| |  ||||||||||||||||    
T  5859 agttttagtgatttgagtgatgaaga 5834  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 5133585 - 5133506
Alignment:
Q  141 ttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgtatttgc 220  Q
    |||||||||| |||||||| | |||||||  |||| ||||||||||||||| ||||| ||| |||||||||  |||||||    
T  5133585 ttttgctgaaatttctagagacgtagttgagtattctgggggattgcctctagctctagaagtccttgggtcatatttgc 5133506  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 5075487 - 5075426
Alignment:
Q  65 tgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaagca 126  Q
    |||||||| |||| |||||||||||| |||||||||||| ||||  ||||||||| ||||||    
T  5075487 tgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcattcaaacaagca 5075426  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 5148736 - 5148655
Alignment:
Q  44 gagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaagc 125  Q
    |||||||||||||||| | | |||||||| |||| ||| |||||||| ||  |||||||| ||||  ||||||||| |||||    
T  5148736 gagttgaccatgtatacaaaatgaaagaaatggatgaaggtgaatcaattatgctttttagttggcatgcattcaagcaagc 5148655  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 5175114 - 5175171
Alignment:
Q  67 aaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaag 124  Q
    |||||| |||| |||||||||||| ||||||| |||||||||  ||||||||| ||||    
T  5175114 aaagaaatggatgaaagtgaatcaattgagctctttaattggcatgcattcaaacaag 5175171  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 36215669 - 36215589
Alignment:
Q  44 gagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaag 124  Q
    |||||||||| |||||   | |||||||| |||| |||||||||||| |||||||||||| ||||  ||||||||| ||||    
T  36215669 gagttgaccaagtatacgcaatgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcattcaagcaag 36215589  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 32412530 - 32412467
Alignment:
Q  146 ctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgg 209  Q
    ||||||| |||||| | || |||||||| ||||| |||||||| |||||||||||| |||||||    
T  32412530 ctgaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttgg 32412467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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