View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_high_28 (Length: 349)
Name: NF14428_high_28
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 34441752 - 34441437
Alignment:
| Q |
17 |
aaatagattacaataacaaactatgagaatattactccaacaaactcaacccttatattctgatctgcttatttatatctcaagggtatcatcattatta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34441752 |
aaatagattacaataacaaactatgagaatattactccaaaaaactcaacccttatattct---ctgcttatttatatctcaagggtatcatcattatta |
34441656 |
T |
|
| Q |
117 |
aaagatatcaagtactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcatacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34441655 |
aaagatatcaagtactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggactttgttgtggtgctatctgcatacat |
34441556 |
T |
|
| Q |
217 |
aaacaaacataactagatattagatccatgcactggtctttttatttttgtaacaaatttataacaaaggaaatatatgaaccttttttggttctgtgaa |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34441555 |
aaacaa--ataactagatattagatccatgcactggtctttttatttttgtaacaaatttataacaaaggaaatatatgaaccttttttggttctgtgaa |
34441458 |
T |
|
| Q |
317 |
gctattctcatcaagtatatt |
337 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34441457 |
gctattctcatcaagtatatt |
34441437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 116 - 332
Target Start/End: Complemental strand, 34451464 - 34451248
Alignment:
| Q |
116 |
aaaagatatcaagtactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcataca |
215 |
Q |
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|||| |||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34451464 |
aaaacatatcaagtattgttaatgacgttggttggactatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcataca |
34451365 |
T |
|
| Q |
216 |
taaacaaacataactagatattagatccatgcactggtctttttatttttgtaacaaatttataacaaaggaaatatatgaaccttttttggttctgtga |
315 |
Q |
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|
||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |
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| T |
34451364 |
taaacaaacataacttgatattagatccatgcgctagtctttttatttttgtaacaaatatataacagaggaaatatatgaaccttttttggttctgcga |
34451265 |
T |
|
| Q |
316 |
agctattctcatcaagt |
332 |
Q |
| |
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||||||||||||||||| |
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| T |
34451264 |
agctattctcatcaagt |
34451248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 129 - 337
Target Start/End: Complemental strand, 34467380 - 34467168
Alignment:
| Q |
129 |
tactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcatacataaacaaacataa |
228 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34467380 |
tactgttaatgaaactggagggatcatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctgcatacataaacaaacataa |
34467281 |
T |
|
| Q |
229 |
ctagatattagatccatgcactggtctttttatttttgtaacaaatttataacaaaggaaatatatg----aaccttttttggttctgtgaagctattct |
324 |
Q |
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|| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||| |
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| T |
34467280 |
cttgatattagatccatgcaccagtctttctatttatgtaacaaatttataacaaaggaaatatatatattaaccttttttggtgctgcgaaggtattct |
34467181 |
T |
|
| Q |
325 |
catcaagtatatt |
337 |
Q |
| |
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||||||||||||| |
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| T |
34467180 |
catcaagtatatt |
34467168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 34451580 - 34451538
Alignment:
| Q |
30 |
taacaaactatgagaatattactccaacaaactcaacccttat |
72 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
34451580 |
taacaaactatgagaatattactccaacagattcaacccttat |
34451538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 17881632 - 17881674
Alignment:
| Q |
17 |
aaatagattacaataacaaactatgagaatattactccaacaa |
59 |
Q |
| |
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||||||||||||||||||||||||||| |||||| | |||||| |
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| T |
17881632 |
aaatagattacaataacaaactatgaggatattagttcaacaa |
17881674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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