View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_high_31 (Length: 326)
Name: NF14428_high_31
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 80 - 291
Target Start/End: Original strand, 30392906 - 30393117
Alignment:
| Q |
80 |
gatttttatttatttttaaataggatgcggatggatctgcaacaccttaagtagattaattaaaaagaaaatttacaaaaagccggaggacatagagact |
179 |
Q |
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| T |
30392906 |
gatttttatttatttttaaataggatgcggatgaatctccaacaccttaagtagactaattaaaaagaaaatttacaaaaagccggaggacatagagacg |
30393005 |
T |
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| Q |
180 |
gaccaaatgaaagcaaaataggaacaatccaaatgggtaattcactacaactgcaaaggataaagaaatcaaaaccataaaagcaaattcaaattcagta |
279 |
Q |
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| T |
30393006 |
gaccaaatgaaagcaaaataggaacaatccaaatgggtaattcactacaaccgcaaaggataaagaaatcaaaaccataaaagcaaatccaaattcagta |
30393105 |
T |
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| Q |
280 |
ctagacacccac |
291 |
Q |
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| T |
30393106 |
ctagacacccac |
30393117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 30392728 - 30392772
Alignment:
| Q |
42 |
ggctgtattgaagaaattctcatatagcggaatggatcgattttt |
86 |
Q |
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| T |
30392728 |
ggctgtattgaagaaattctcatatagtggaatggatcgattttt |
30392772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 33472287 - 33472246
Alignment:
| Q |
97 |
aaataggatgcggatggatctgcaacaccttaagtagattaa |
138 |
Q |
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| T |
33472287 |
aaataggatgcagatggatctgccacacctcaagtagattaa |
33472246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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