View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_high_34 (Length: 289)
Name: NF14428_high_34
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 43702297 - 43702549
Alignment:
| Q |
18 |
atataatgtgtaacaaccttaacaaatcattgaagaccaacaaa---aatatggattgcattcaacatggtagacaaacatgactaactaacaaaaccta |
114 |
Q |
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| T |
43702297 |
atataatgtgtaacaaccttaacaaatcattgaagaccaacatatttaatatggattgcattcaacatcatagacaaacatgactaactaacaaaaccta |
43702396 |
T |
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| Q |
115 |
aaatctcaatctccaannnnnnnnnnnnnnaaatcttcaaataattgagttaactaaaacaatctccaaataatcaagttaagaccgttggattaattaa |
214 |
Q |
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| T |
43702397 |
aaatctcaatctccaatttttttttt----aaatcttcaaataattgagttaactaaaacaatctccaaataatcaagttaagaccgttggattaattaa |
43702492 |
T |
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| Q |
215 |
cggccaggattcgttggggaatctgaattctgtgttgcaaccgcatcatgtaattcc |
271 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43702493 |
cggccacgattcgttggggaatctgaattctgtgttgcaaccgcatcatgtaattcc |
43702549 |
T |
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