View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_high_38 (Length: 273)
Name: NF14428_high_38
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 12762568 - 12762823
Alignment:
| Q |
1 |
tgatgaatcttccctgtcatattcaaggactccacaagaaatattgaggattatatatggaagtggtaatgaaagtgtccctggttgcttctaccctaag |
100 |
Q |
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| T |
12762568 |
tgatgaatcttccctgtcatattcaaggactccacaagaaatattgaggattatatatggaagtggtaatgaaagtgtccctggttgcttctaccctaag |
12762667 |
T |
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| Q |
101 |
ggaggaaatggacgtatagctagatctttcctacacacatcttaattagagttgttaagaactgaatctcttactattgtgcctatttgtaggttgtaag |
200 |
Q |
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| T |
12762668 |
ggaggaaatggacgtatagttagatctttcctacacacatcttaattagagttgttaagaactgaatctcttactattgtgcctatttgtaggttgtaag |
12762767 |
T |
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| Q |
201 |
acagctagagaaaatataataagcattcaatatgatataattaatcttggttgaaa |
256 |
Q |
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| T |
12762768 |
acacctagagaaaatataataagcattcaatatgatataattaatcttggttgaaa |
12762823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 12783868 - 12783976
Alignment:
| Q |
17 |
tcatattcaaggactccacaagaaatattgaggattatatatggaagtggtaatgaaagtgtccctggttgcttctaccctaagggaggaaatggacgta |
116 |
Q |
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| T |
12783868 |
tcatatccaaggactccacaagaaatattgaggattatatatggaagtggtaatgagagtgtccctggtggcttctaccctaagggagcagatggtcgta |
12783967 |
T |
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| Q |
117 |
tagctagat |
125 |
Q |
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| T |
12783968 |
tagcaagat |
12783976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 12771994 - 12772088
Alignment:
| Q |
17 |
tcatattcaaggactccacaagaaatattgaggattatatatggaagtggtaatgaaagtgtccctggttgcttctaccctaagggaggaaatgg |
111 |
Q |
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| T |
12771994 |
tcatattcaagaactccaaatgaaatattgagaattgtatatggaagtggtgatgaacatgtcccaggtggcttctaccctaaaggaggagatgg |
12772088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 50712441 - 50712339
Alignment:
| Q |
17 |
tcatattcaaggactccacaagaaatattgaggattatatatggaagtggtaatgaaagtgtccctggttgcttctaccctaagggaggaaatggacgta |
116 |
Q |
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| T |
50712441 |
tcatattcaaggactccagaagaaatattgaggatagtgtatg---gtcgatatgaaattgttcctggtggcttctttcctaagggagcagatggtcgta |
50712345 |
T |
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| Q |
117 |
tagcta |
122 |
Q |
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|||||| |
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| T |
50712344 |
tagcta |
50712339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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