View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14428_high_6 (Length: 553)

Name: NF14428_high_6
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14428_high_6
NF14428_high_6
[»] chr6 (3 HSPs)
chr6 (336-535)||(12196818-12197017)
chr6 (12-203)||(12197052-12197243)
chr6 (67-105)||(8317708-8317746)
[»] chr7 (3 HSPs)
chr7 (19-302)||(6372851-6373123)
chr7 (67-105)||(7942287-7942325)
chr7 (184-261)||(27759426-27759503)
[»] chr2 (4 HSPs)
chr2 (234-511)||(33683950-33684227)
chr2 (234-511)||(33701004-33701281)
chr2 (67-105)||(8053307-8053345)
chr2 (67-105)||(36672966-36673004)
[»] chr3 (3 HSPs)
chr3 (24-506)||(14639082-14639564)
chr3 (67-105)||(43552207-43552245)
chr3 (67-105)||(54169548-54169586)
[»] scaffold0044 (1 HSPs)
scaffold0044 (67-105)||(47069-47107)
[»] chr8 (3 HSPs)
chr8 (67-105)||(199888-199926)
chr8 (67-105)||(314725-314763)
chr8 (67-105)||(30408007-30408045)
[»] chr5 (4 HSPs)
chr5 (67-105)||(7101578-7101616)
chr5 (67-105)||(12021204-12021242)
chr5 (67-105)||(16796584-16796622)
chr5 (67-105)||(37679951-37679989)
[»] chr4 (1 HSPs)
chr4 (67-105)||(44149473-44149511)
[»] chr1 (1 HSPs)
chr1 (67-105)||(26313928-26313966)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 336 - 535
Target Start/End: Complemental strand, 12197017 - 12196818
Alignment:
Q  336 agatgaatattgggattgtactgcaaacaagtgcagtgtctctgagaagcaggttatcattgaagataatagagaatctgatgagctcaccataaatgaa 435  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12197017 agatgaatattgggattgtactgcaaataagtgcagtgtctctgagaaggaggttatcattgaagataatagagaatctgatgagctcaccataaatgaa 12196918  T
Q  436 gttgctaatgaagaagaaatcttagatgaagagtcaaccactatagccagaccacaaagaaacagacaaattccaagaagtttagaagactgtcaggtaa 535  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12196917 gttgctaatgatgaagaaatcatagatgaagagtcaaccactatagccagaccacaaagaaacagacaaattccaagaagttcagaagactgtcaggtaa 12196818  T

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Target: chr6; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 12197243 - 12197052
Alignment:
Q  12 gattatactgatagagaagaagcttcctcttgaattttggggtaaagtagggaatactgcagcttacatcttaaatagatgtcccactaagaaattgaag 111  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12197243 gattatgctgatagagaagaagctacctcatgaattttggggtaaagtagggaatattgcagcttacatcttaaatagatgtcccactaagaaattgaag 12197144  T
Q  112 aatcaagtgtctgaagaggtttggtcaggtagaaaaccatatgtcagtcatttgaaggtgtttagctcaatatgctataaacatatccctga 203  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  12197143 aatcaagtgcctgaagaggtttggtcaggtagaaaaccatatgtcagtcatttgaaggtatttggctcaatatgctataagcatatccctga 12197052  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 8317746 - 8317708
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  8317746 actgcagcatacatcttaaacagatgtcccactaagaaa 8317708  T

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Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 6373123 - 6372851
Alignment:
Q  19 ctgatagagaagaagcttcctcttgaattttggggtaaagtagggaatactgcagcttacatcttaaatagatgtcccactaagaaattgaagaatcaag 118  Q
    |||| |||||| ||||| |||| |||||| |||||| ||| || |||||||| |||||| ||||||||||           |||||||||||||||||||    
T  6373123 ctgaaagagaaaaagctacctcatgaattctggggtgaagcagtgaatactgtagcttatatcttaaata-----------aagaaattgaagaatcaag 6373035  T
Q  119 tgtctgaagaggtttggtcaggtagaaaaccatatgtcagtcatttgaaggtgtttagctcaatatgctataaacatatccctgatgcaagaagaaagaa 218  Q
    |  |||||||||||||||| |||||||||||||   |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| |||||||||||||    
T  6373034 ttcctgaagaggtttggtcgggtagaaaaccatcaatcagtcatttgaagatgtttggctcaataagctataagcatgtccctgatacaagaagaaagaa 6372935  T
Q  219 gttggaggacaagaatgaagctatgatcttagttggttatcataatactagagcatatagattgcttgatccacaatctaagaa 302  Q
    |||||||||||||| ||||| ||||||||||||||||||||| |||| | |||||||||  |||||||||||| ||||||||||    
T  6372934 gttggaggacaagagtgaagttatgatcttagttggttatcacaatattggagcatatatgttgcttgatccataatctaagaa 6372851  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 7942325 - 7942287
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  7942325 actgcagcatacatcttaaacagatgtcccactaagaaa 7942287  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 27759426 - 27759503
Alignment:
Q  184 tgctataaacatatccctgatgcaagaagaaagaagttggaggacaagaatgaagctatgatcttagttggttatcat 261  Q
    |||||||  ||||||||||||||||  |||| |||||||| ||| |||| |||| ||||||| || ||||| ||||||    
T  27759426 tgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatgatattggttggctatcat 27759503  T

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Target: chr2 (Bit Score: 126; Significance: 1e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 234 - 511
Target Start/End: Original strand, 33683950 - 33684227
Alignment:
Q  234 tgaagctatgatcttagttggttatcataatactagagcatatagattgcttgatccacaatctaagaaaattgctatcagtaggtatgtgaaagtctta 333  Q
    |||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||| |||| |||||||||||||| || |||||  ||||||| || |||    
T  33683950 tgaatctatgatcttagttggatatcacaatactggagcatatagattgtttgattcacactctaagaaaattgcaattagtagagatgtgaatgtttta 33684049  T
Q  334 gaagatgaatattgggattgtactgcaaacaagtgcagtgtctctgagaagcaggttatcattgaagataatagagaatctgatgagctcaccataaatg 433  Q
    || || |||||||||||||| | | ||||  | |||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||    
T  33684050 gaggaagaatattgggattggaattcaaatgaatgcagtgtgtctgagaagcaagttatcattgaagataataaagaaactgatgagcttaccatcaatg 33684149  T
Q  434 aagttgctaatgaagaagaaatcttagatgaagagtcaaccactatagccagaccacaaagaaacagacaaattccaa 511  Q
    |||  |||| | ||||| |||| |||||||| ||| |||||||||||||||||||| ||||||||| |||||| ||||    
T  33684150 aagaagctattaaagaataaatattagatgaggagccaaccactatagccagaccataaagaaacaaacaaatcccaa 33684227  T

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Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 234 - 511
Target Start/End: Original strand, 33701004 - 33701281
Alignment:
Q  234 tgaagctatgatcttagttggttatcataatactagagcatatagattgcttgatccacaatctaagaaaattgctatcagtaggtatgtgaaagtctta 333  Q
    |||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||| |||| |||||||||||||| || |||||  ||||||| || |||    
T  33701004 tgaatctatgatcttagttggatatcacaatactggagcatatagattgtttgattcacactctaagaaaattgcaattagtagagatgtgaatgtttta 33701103  T
Q  334 gaagatgaatattgggattgtactgcaaacaagtgcagtgtctctgagaagcaggttatcattgaagataatagagaatctgatgagctcaccataaatg 433  Q
    || || |||||||||||||| | | ||||  | |||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||    
T  33701104 gaggaagaatattgggattggaattcaaatgaatgcagtgtgtctgagaagcaagttatcattgaagataataaagaaactgatgagcttaccatcaatg 33701203  T
Q  434 aagttgctaatgaagaagaaatcttagatgaagagtcaaccactatagccagaccacaaagaaacagacaaattccaa 511  Q
    |||  |||| | ||||| |||| |||||||| ||| |||||||||||||||||||| ||||||||| |||||| ||||    
T  33701204 aagaagctattaaagaataaatattagatgaggagccaaccactatagccagaccataaagaaacaaacaaatcccaa 33701281  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 8053307 - 8053345
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  8053307 actgcagcatacatcttaaacagatgtcccactaagaaa 8053345  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 36672966 - 36673004
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  36672966 actgcagcatacatcttaaacagatgtcccactaagaaa 36673004  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 24 - 506
Target Start/End: Original strand, 14639082 - 14639564
Alignment:
Q  24 agagaagaagcttcctcttgaattttggggtaaagtagggaatactgcagcttacatcttaaatagatgtcccactaagaaattgaagaatcaagtgtct 123  Q
    |||||| ||| | |||| |||||||||||||  || ||  || |||||| |||| ||  ||||||||||||| ||||||||  ||||| || | ||| ||    
T  14639082 agagaaaaagatacctcatgaattttggggtgcagcagtcaacactgcaacttatattctaaatagatgtcctactaagaagatgaaggataaggtgcct 14639181  T
Q  124 gaagaggtttggtcaggtagaaaaccatatgtcagtcatttgaaggtgtttagctcaatatgctataaacatatccctgatgcaagaagaaagaagttgg 223  Q
    |||||| |||||||| | || ||||| |   ||| | ||||||| || ||| | ||||| | |||||| ||| | |||||| |||||||||||||| | |    
T  14639182 gaagagatttggtcaagaaggaaaccttcaatcattaatttgaaagtttttggttcaatcttctataagcatgttcctgattcaagaagaaagaagctag 14639281  T
Q  224 aggacaagaatgaagctatgatcttagttggttatcataatactagagcatatagattgcttgatccacaatctaagaaaattgctatcagtaggtatgt 323  Q
    ||||||| | |||||||||||| || ||||| ||||| || ||| |||| |||||||||||||||| ||| |||||||| ||| | || | |||  ||||    
T  14639282 aggacaaaattgaagctatgattttggttggctatcacaacactggagcttatagattgcttgatctacactctaagaagatttcaataattagagatgt 14639381  T
Q  324 gaaagtcttagaagatgaatattgggattgtactgcaaacaagtgcagtgtctctgagaagcaggttatcattgaagataatagagaatctgatgagctc 423  Q
    |||||| ||||| || ||||| |||||||| | | ||||  | |||||||| | ||| ||  | |||||||||||| |||| |  || |||||||||||     
T  14639382 gaaagtgttagaggaagaatactgggattggaattcaaatgaatgcagtgtgtatgaaaaaaatgttatcattgaaaataagaaggagtctgatgagctt 14639481  T
Q  424 accataaatgaagttgctaatgaagaagaaatcttagatgaagagtcaaccactatagccagaccacaaagaaacagacaaat 506  Q
      || ||||||||  | || |   |||||  | | | |||| ||| |||| ||||||||||||||||||||||||| ||||||    
T  14639482 ctcacaaatgaagaagttatttctgaagaggtatcatatgaggagccaacaactatagccagaccacaaagaaacaaacaaat 14639564  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 43552207 - 43552245
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  43552207 actgcagcatacatcttaaacagatgtcccactaagaaa 43552245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 54169586 - 54169548
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  54169586 actgcagcatacatcttaaacagatgtcccactaagaaa 54169548  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 47107 - 47069
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  47107 actgcagcatacatcttaaacagatgtcccactaagaaa 47069  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 199926 - 199888
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  199926 actgcagcatacatcttaaacagatgtcccactaagaaa 199888  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 314763 - 314725
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  314763 actgcagcatacatcttaaacagatgtcccactaagaaa 314725  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 30408045 - 30408007
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  30408045 actgcagcatacatcttaaacagatgtcccactaagaaa 30408007  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 7101616 - 7101578
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  7101616 actgcagcatacatcttaaacagatgtcccactaagaaa 7101578  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 12021204 - 12021242
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  12021204 actgcagcatacatcttaaacagatgtcccactaagaaa 12021242  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 16796584 - 16796622
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  16796584 actgcagcatacatcttaaacagatgtcccactaagaaa 16796622  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 37679951 - 37679989
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  37679951 actgcagcatacatcttaaacagatgtcccactaagaaa 37679989  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 44149473 - 44149511
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  44149473 actgcagcatacatcttaaacagatgtcccactaagaaa 44149511  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 26313928 - 26313966
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  26313928 actgcagcatacatcttaaacagatgtcccactaagaaa 26313966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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