View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_high_7 (Length: 549)
Name: NF14428_high_7
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 98 - 533
Target Start/End: Original strand, 8000807 - 8001242
Alignment:
| Q |
98 |
ccttccggctttgcttatttcaatatacgttacatcacaggctatcattaagcctcaatatgttgaccacattccaaaagctgtgcaagggaacgtgggg |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8000807 |
ccttccggctttgcttatttcaatatacgttacatcacaggctatcattaagcctcaatatgttgaccacattccaaaagctgtgcaagggaacgtgggg |
8000906 |
T |
|
| Q |
198 |
cagacgctagactcaaaaaatgagagagatatgaaggaaaaactttgtgctgatctcgagcttaatcaagttatagatcgtaatgttggtgatctttctg |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8000907 |
cagacgctagactcaaaaaatgagagagatatgaaggaaaaactttgtgctgatctcgagcttaatcaagttatagatcgtaatgttggtgatctttcag |
8001006 |
T |
|
| Q |
298 |
ggggtgagctccaaaggtttgccattgcagttgttgccatccaaaatgctgagatatacatgtttgatgaaccttccagttatcttgatgtgaaacagag |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8001007 |
ggggtgagctccaaaggtttgccattgcagttgttgccatccaaaatgctgagatatacatgtttgatgaaccttccagttatcttgatgtgaaacagag |
8001106 |
T |
|
| Q |
398 |
gctgaaagctgcgcaagttgttcggtcattgctcaggcctaataggtttgtttcctttcctttgtagtttctgctttaaacattgttgatatcactatgt |
497 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8001107 |
gctgaaagctgcgcaagttgttcggtcattgctcaggcctaataggtttgtttcctttcctttgtagtttctgctttaaacattgatgatatcactatgt |
8001206 |
T |
|
| Q |
498 |
gatttgtcgttgatttttatcaagaatcgttatttt |
533 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
8001207 |
gatttgtcattgatttttatcaagaatcgttatttt |
8001242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 98 - 533
Target Start/End: Complemental strand, 7907541 - 7907105
Alignment:
| Q |
98 |
ccttccggctttgcttatttcaatatacgttacatcacaggctatcattaagcctcaatatgttgaccacattccaaaagctgtgcaagggaacgtgggg |
197 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| ||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
7907541 |
ccttccggctt-gcttatttcactatacgttacaatacaggctgtcatcaagcctcaatatgttgacgacattccaaaccatgtgcaagggaacgtgggg |
7907443 |
T |
|
| Q |
198 |
cagacgctagactcaaaaaatgagagagatatgaaggaaaaactttgtg--ctgatctcgagcttaatcaagttatagatcgtaatgttggtgatctttc |
295 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
7907442 |
caagtgctagaccaaaaaaatgagagagatatgaaggaaaagctttgtgtgctgatcttgaacttaatcaagttatagatcgtaatgttggtgatctttc |
7907343 |
T |
|
| Q |
296 |
tgggggtgagctccaaaggtttgccattgcagttgttgccatccaaaatgctgagatatacatgtttgatgaaccttccagttatcttgatgtgaaacag |
395 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7907342 |
agggggtgagctccaaaggtttgccattgcagttgttgccatccaaaatgctgagatatacatgtttgatgaaccttccagttatcttgatgtgaaacag |
7907243 |
T |
|
| Q |
396 |
aggctgaaagctgcgcaagttgttcggtcattgctcaggcctaataggtttgtttcctttcctttgtagtttctgctttaaacattgttgatatcactat |
495 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7907242 |
aggctgaaagctgcgcaagttgttcggtcattgctcaggcctaataggtttgtttcctttcctttgtagtttctgctttaaacattgttgatatcactat |
7907143 |
T |
|
| Q |
496 |
gtgatttgtcgttgatttttatcaagaatcgttatttt |
533 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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|
| T |
7907142 |
gtgatttgtcattgatttttatcaagaatcgttatttt |
7907105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 109 - 522
Target Start/End: Original strand, 51516119 - 51516531
Alignment:
| Q |
109 |
tgcttatttcaatatacgttacatcacaggctatcattaagcctcaatatgttgaccacattccaaaagctgtgcaagggaacgtggggcagacgctaga |
208 |
Q |
| |
|
||||||||||||||||| | | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
51516119 |
tgcttatttcaatatacatcgtaatacaggctatcatcaagcctcagtatgttgaccacattccaaaagctgtgcaagggaatgtggggcaggtgctaga |
51516218 |
T |
|
| Q |
209 |
ctcaaaaaatgagagagatatgaaggaaaaactttgtgctgatctcgagcttaatcaagttatagatcgtaatgttggtgatctttctgggggtgagctc |
308 |
Q |
| |
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| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51516219 |
ccaaaaaaatgagagagacatgaaggaaaggctttgtgctgatcttgagcttaatcaagttatagatcgtaatgttggtgatctttcagggggtgagctc |
51516318 |
T |
|
| Q |
309 |
caaaggtttgccattgcagttgttgccatccaaaatgctgagatatacatgtttgatgaaccttccagttatcttgatgtgaaacagaggctgaaagctg |
408 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51516319 |
caaaggtttgccattgcggttgttgccatccaaaatgctgagatatacatgtttgatgaaccttccagttatcttgatgtgaaacagaggctgaaagctg |
51516418 |
T |
|
| Q |
409 |
cgcaagttgttcggtcattgctcaggcctaataggtttgtttcctttcctttgtagtttctgctttaaacattgttgatatcactatgtgatttgtcgtt |
508 |
Q |
| |
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| ||||||||||| |||||||||||||||||||||||| ||| |||||| ||||| |||||||||| | ||| ||||||||||||||| |||| || |
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| T |
51516419 |
cccaagttgttcgatcattgctcaggcctaataggttt-tttaatttcctctgtagcttctgctttatatatttgtgatatcactatgtgcactgtcatt |
51516517 |
T |
|
| Q |
509 |
gatttttatcaaga |
522 |
Q |
| |
|
||||||| |||||| |
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|
| T |
51516518 |
gatttttgtcaaga |
51516531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 8000713 - 8000783
Alignment:
| Q |
18 |
ctttatttctgaaaaacattcttatgttgtttttgaactttgtattgataaggtagcgtgtcacacatgcc |
88 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8000713 |
ctttatttctgaaaaacgttcttatgttgtttttgaactttgtattgataaggtagcgtgtcacacatgcc |
8000783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 496
Target Start/End: Complemental strand, 1302932 - 1302544
Alignment:
| Q |
109 |
tgcttatttcaatatacgttacatcacaggctatcattaagcctcaatatgttgaccacattccaaaagctgtgcaagggaacgtggggcagacgctaga |
208 |
Q |
| |
|
|||||||||||| ||| |||| | |||||||||||| |||||||| |||||||| || ||| || | | ||||| ||| || |||||| ||||||| |
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|
| T |
1302932 |
tgcttatttcaacatatgttataatacaggctatcatcaagcctcagtatgttgatgactttcgaagaaaggagcaagtgaatgttgggcaggcgctaga |
1302833 |
T |
|
| Q |
209 |
ctcaaaaaatgagagagatatgaaggaaaaactttgtgctgatctcgagcttaatcaagttatagatcgtaatgttggtgatctttctgggggtgagctc |
308 |
Q |
| |
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| ||| ||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
1302832 |
ccaaaagaatgagagagatatgaaggaagagctttgtgctgctcttgagcttaatcaagttatagatcgtaatgttgttgatctttcagggggtgagctt |
1302733 |
T |
|
| Q |
309 |
caaaggtttgccattgcagttgttgccatccaaaatgctgagatatacatgtttgatgaaccttccagttatcttgatgtgaaacagaggctgaaagctg |
408 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
1302732 |
caaaggtttgccattgcaggtattgccatccaaaatgcggagatatacatgtttgatgaaccttctagttatcttgatgtgaaacagaggctgaaagctg |
1302633 |
T |
|
| Q |
409 |
cgcaagttgttcggtcattgctcaggcctaataggtttgtttccttt-cctttgtagtttctgctttaaacattgttgatatcactatg |
496 |
Q |
| |
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| |||||||| ||||||||||| |||| |||||||| ||||| ||| | ||||| |||||||||||| ||||| ||||||||||| |
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|
| T |
1302632 |
cccaagttgtccggtcattgctaaggcataataggtctgtttattttatatctgtagcttctgctttaaatattgtcaatatcactatg |
1302544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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