View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14428_low_10 (Length: 524)

Name: NF14428_low_10
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14428_low_10
NF14428_low_10
[»] chr2 (2 HSPs)
chr2 (15-176)||(21754712-21754873)
chr2 (15-176)||(21768857-21769018)
[»] chr4 (7 HSPs)
chr4 (284-395)||(720352-720463)
chr4 (305-395)||(702712-702802)
chr4 (305-395)||(771011-771101)
chr4 (21-107)||(3357446-3357533)
chr4 (21-107)||(3367112-3367199)
chr4 (188-228)||(732530-732570)
chr4 (76-133)||(49890941-49890998)
[»] chr6 (4 HSPs)
chr6 (15-149)||(27642639-27642763)
chr6 (21-107)||(34269866-34269952)
chr6 (21-122)||(20074413-20074514)
chr6 (99-149)||(33252697-33252747)
[»] scaffold0007 (1 HSPs)
scaffold0007 (15-122)||(62365-62472)
[»] chr8 (1 HSPs)
chr8 (15-122)||(15831017-15831124)
[»] chr5 (2 HSPs)
chr5 (15-133)||(36432460-36432578)
chr5 (15-133)||(36432813-36432931)
[»] chr7 (6 HSPs)
chr7 (21-133)||(4890206-4890318)
chr7 (21-107)||(792947-793033)
chr7 (21-107)||(808730-808816)
chr7 (21-107)||(3423581-3423668)
chr7 (15-59)||(16264832-16264875)
chr7 (15-59)||(16272498-16272541)
[»] scaffold0278 (2 HSPs)
scaffold0278 (98-149)||(14893-14944)
scaffold0278 (98-149)||(18227-18278)
[»] scaffold0016 (1 HSPs)
scaffold0016 (99-149)||(57617-57667)
[»] scaffold0560 (1 HSPs)
scaffold0560 (76-133)||(9834-9891)
[»] scaffold0014 (1 HSPs)
scaffold0014 (76-133)||(187660-187717)
[»] chr3 (7 HSPs)
chr3 (96-146)||(27873277-27873327)
chr3 (15-59)||(3675871-3675914)
chr3 (15-59)||(3685006-3685049)
chr3 (15-59)||(20434829-20434872)
chr3 (15-59)||(20448755-20448798)
chr3 (15-59)||(30021705-30021748)
chr3 (15-59)||(41431995-41432038)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 21754712 - 21754873
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttcaggggtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21754712 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagaccggttcagaccggttcaggggtt 21754811  T
Q  115 gaaccggtccaatcccttttataaatacacagctctggnnnnnnnaatcatttttatttcaa 176  Q
    ||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||    
T  21754812 gaaccggtccaatcccttttataaatacacagctccggtttttttaatcatttttatttcaa 21754873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 21768857 - 21769018
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttcaggggtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  21768857 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggtctggaatagaccggttcagaccggttcaggggtt 21768956  T
Q  115 gaaccggtccaatcccttttataaatacacagctctggnnnnnnnaatcatttttatttcaa 176  Q
    ||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||    
T  21768957 gaaccggtccaatcccttttataaatacacagctccggtttttttaatcatttttatttcaa 21769018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 284 - 395
Target Start/End: Complemental strand, 720463 - 720352
Alignment:
Q  284 tcatatcctacacaaaagaacagaaaaaatagatcatgaaaagtttgtataaaactatttttcatgtcttcaagacctaaaggaactactaactcttcac 383  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  720463 tcatatcctacacaaaagaaaagaaaaaatagatcatgaaaagtttgtataaaactatttttcatgtcttcaagacctaaaggaactactaactcttcac 720364  T
Q  384 taagttgagagc 395  Q
    ||||||||||||    
T  720363 taagttgagagc 720352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 305 - 395
Target Start/End: Original strand, 702712 - 702802
Alignment:
Q  305 agaaaaaatagatcatgaaaagtttgtataaaactatttttcatgtcttcaagacctaaaggaactactaactcttcactaagttgagagc 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702712 agaaaaaatagatcatgaaaagtttgtataaaactatttttcatgtcttcaagacctaaaggaactactaactcttcactaagttgagagc 702802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 305 - 395
Target Start/End: Original strand, 771011 - 771101
Alignment:
Q  305 agaaaaaatagatcatgaaaagtttgtataaaactatttttcatgtcttcaagacctaaaggaactactaactcttcactaagttgagagc 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  771011 agaaaaaatagatcatgaaaagtttgtataaaactatttttcatgtcttcaagacctaaaggaactactaactcttcactaagttgagagc 771101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 3357533 - 3357446
Alignment:
Q  21 gggtgcagaaaa-taaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttc 107  Q
    |||||||||||| ||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||    
T  3357533 gggtgcagaaaaataaaacgaaaaggatttgggtcttgggtgaggccaggcgcgtgtgggcctggaataggccggttcagaccggttc 3357446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 3367199 - 3367112
Alignment:
Q  21 gggtgcagaaaa-taaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttc 107  Q
    |||||||||||| ||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||    
T  3367199 gggtgcagaaaaataaaacgaaaaggatttgggtcttgggtgaggccaggcgcgtgtgggcctggaataggccggttcagaccggttc 3367112  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 732570 - 732530
Alignment:
Q  188 gtgttttgatatattaattggaatgtaatgcatatatatag 228  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  732570 gtgttttgatatattaattggaatgtaatgcatatatatag 732530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 49890998 - 49890941
Alignment:
Q  76 tgggcctggaatagacgggttcagaccggttcaggggttgaaccggtccaatcccttt 133  Q
    |||||||||| ||||| |||||||||||||| |  |||||||||||| ||||||||||    
T  49890998 tgggcctggattagaccggttcagaccggtttaaaggttgaaccggttcaatcccttt 49890941  T

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Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 27642763 - 27642639
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttcaggggtt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||    
T  27642763 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaat----------agaccggttcaggggtt 27642674  T
Q  115 gaaccggtccaatcccttttataaatacacagctc 149  Q
    |||||| ||||||||||||||||||||||||||||    
T  27642673 gaaccgctccaatcccttttataaatacacagctc 27642639  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 34269952 - 34269866
Alignment:
Q  21 gggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttc 107  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  34269952 gggtgcagaaaataaaacgaaaaggatttgggccttgggtgaggccaggcgcgtgtgggcctggaatagaccggttcagaccggttc 34269866  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 20074413 - 20074514
Alignment:
Q  21 gggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttcaggggttgaaccg 120  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||| ||||| |||||||||||||||   ||||||||||    
T  20074413 gggtgcaggaaataaaatgaagaggatttgggccttgggtgaagccagacgcgtgtgggcttggattagaccggttcagaccggttccaaggttgaaccg 20074512  T
Q  121 gt 122  Q
    ||    
T  20074513 gt 20074514  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 33252747 - 33252697
Alignment:
Q  99 gaccggttcaggggttgaaccggtccaatcccttttataaatacacagctc 149  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  33252747 gaccggttcagaagttgaaccggttcaatcccttttataaatacacagctc 33252697  T

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Target: scaffold0007 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 62472 - 62365
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttcaggggtt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||   ||||    
T  62472 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccaggcgcgtgtgggcctggaatagaccggttcagaccggttccaaggtt 62373  T
Q  115 gaaccggt 122  Q
    ||||||||    
T  62372 gaaccggt 62365  T

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Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 15831124 - 15831017
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttcaggggtt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||   ||||    
T  15831124 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccaggcgcgtgtgggcctggaatagaccggttcagaccggttccaaggtt 15831025  T
Q  115 gaaccggt 122  Q
    ||||||||    
T  15831024 gaaccggt 15831017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 36432578 - 36432460
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttcaggggtt 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||| |||||||||||||| |  ||||    
T  36432578 aaaggggggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccagacgcgtgtgggcttggattagactggttcagaccggtttaaaggtt 36432479  T
Q  115 gaaccggtccaatcccttt 133  Q
    |||||||| ||||||||||    
T  36432478 gaaccggttcaatcccttt 36432460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 36432931 - 36432813
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttcaggggtt 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||| ||||| |||||||||||||| |  ||||    
T  36432931 aaaggggggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccagacgcgtgtgagcttggattagactggttcagaccggtttaaaggtt 36432832  T
Q  115 gaaccggtccaatcccttt 133  Q
    |||||||| ||||||||||    
T  36432831 gaaccggttcaatcccttt 36432813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 4890206 - 4890318
Alignment:
Q  21 gggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttcaggggttgaaccg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||| |||||||||||||| |  ||||||||||    
T  4890206 gggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccagacgcgtgtgggcttggattagaccggttcagaccggtttaaaggttgaaccg 4890305  T
Q  121 gtccaatcccttt 133  Q
    || ||||||||||    
T  4890306 gttcaatcccttt 4890318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 792947 - 793033
Alignment:
Q  21 gggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttc 107  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  792947 gggtgcagaaaataaaacgaaaaggatttgggccttgggtgaggccaggcgcgtgtgggcctggaatagaccggttcagaccggttc 793033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 808730 - 808816
Alignment:
Q  21 gggtgcagaaaataaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttc 107  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  808730 gggtgcagaaaataaaacgaaaaggatttgggtcttgggtgaggccaggcgcgtgtgggcttggaatagaccggttcagaccggttc 808816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 3423581 - 3423668
Alignment:
Q  21 gggtgcagaaaa-taaaatgaagaggatttgggccttgggtgaggccgggcgcgtgtgggcctggaatagacgggttcagaccggttc 107  Q
    |||||||||||| ||||| ||| |||||||||| ||||||| ||||| |||||||||||||||||||||| | |||||||||||||||    
T  3423581 gggtgcagaaaaataaaacgaaaaggatttgggtcttgggtnaggccaggcgcgtgtgggcctggaataggccggttcagaccggttc 3423668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 16264832 - 16264875
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttggg 59  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  16264832 aaaggagggtgcaggaaataaaatgaggagga-ttgggccttggg 16264875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 16272498 - 16272541
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttggg 59  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  16272498 aaaggagggtgcaggaaataaaatgaggagga-ttgggccttggg 16272541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 14893 - 14944
Alignment:
Q  98 agaccggttcaggggttgaaccggtccaatcccttttataaatacacagctc 149  Q
    |||||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  14893 agaccggttcagagattgaaccggttcaatcccttttataaatacacagctc 14944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 18227 - 18278
Alignment:
Q  98 agaccggttcaggggttgaaccggtccaatcccttttataaatacacagctc 149  Q
    |||||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  18227 agaccggttcagagattgaaccggttcaatcccttttataaatacacagctc 18278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 57617 - 57667
Alignment:
Q  99 gaccggttcaggggttgaaccggtccaatcccttttataaatacacagctc 149  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  57617 gaccggttcagaagttgaaccggttcaatcccttttataaatacacagctc 57667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0560 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0560
Description:

Target: scaffold0560; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 9891 - 9834
Alignment:
Q  76 tgggcctggaatagacgggttcagaccggttcaggggttgaaccggtccaatcccttt 133  Q
    |||||||||| ||||| |||||||||||||| |  |||||||||||| ||||||||||    
T  9891 tgggcctggattagaccggttcagaccggtttaaaggttgaaccggttcaatcccttt 9834  T

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Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 187660 - 187717
Alignment:
Q  76 tgggcctggaatagacgggttcagaccggttcaggggttgaaccggtccaatcccttt 133  Q
    |||||||||| ||||| |||||||||||||| |  |||||||||||| ||||||||||    
T  187660 tgggcctggattagaccggttcagaccggtttaaaggttgaaccggttcaatcccttt 187717  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 27873327 - 27873277
Alignment:
Q  96 tcagaccggttcaggggttgaaccggtccaatcccttttataaatacacag 146  Q
    |||||||||||||| |||||||||||| |||||||  ||||||||| ||||    
T  27873327 tcagaccggttcagaggttgaaccggttcaatccccgttataaatagacag 27873277  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 3675914 - 3675871
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttggg 59  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  3675914 aaaggagggtgcaggaaataaaatgaggagga-ttgggccttggg 3675871  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 3685049 - 3685006
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttggg 59  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  3685049 aaaggagggtgcaggaaataaaatgaggagga-ttgggccttggg 3685006  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 20434872 - 20434829
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttggg 59  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  20434872 aaaggagggtgcaggaaataaaatgaggagga-ttgggccttggg 20434829  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 20448798 - 20448755
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttggg 59  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  20448798 aaaggagggtgcaggaaataaaatgaggagga-ttgggccttggg 20448755  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 30021748 - 30021705
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttggg 59  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  30021748 aaaggagggtgcaggaaataaaatgaggagga-ttgggccttggg 30021705  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 41432038 - 41431995
Alignment:
Q  15 aaaggagggtgcagaaaataaaatgaagaggatttgggccttggg 59  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  41432038 aaaggagggtgcaggaaataaaatgaggagga-ttgggccttggg 41431995  T

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