View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_15 (Length: 477)
Name: NF14428_low_15
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Original strand, 53560978 - 53561422
Alignment:
| Q |
17 |
aggtagcattccctttagttatttggggttaccagttggagcgaatccgggaagagtggcaacttgggatcct-ttttgcgattcctaacaaatagattg |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
53560978 |
aggtagccttccctttagttatttggggttaccagttggagcgaatccgggaagagtggcaacttgggatcctcttttgtgattcctaacaaatagattg |
53561077 |
T |
|
| Q |
116 |
aatagttgggggaataagttcataagtcttggtggtagagtggtgcttctcaattcggtgttgaatttcattcctatttattacttgtcctttatgagaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
53561078 |
aatagttgggggaataagttcataagtcttggtggtagagtggtgcttctcaattcggtgttgaattccatttctatttattacttgtcctttatgagaa |
53561177 |
T |
|
| Q |
216 |
tgccatctaaagtccggcggaatttggtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggt |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53561178 |
tgccatctaaagtccggcggaatttggtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggtgaagtggaaggt |
53561277 |
T |
|
| Q |
316 |
ggtgtgtcaaccgaaagataatggaggcttgggggtgagagatgtcaatgttgttaacttaagccttctagcgaaatggaggtggaggatgttgcaaaaa |
415 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53561278 |
ggtgtgtcaaccgaaagataatggaggcttgggggtgagggatgtcaatattgttaacttaagccttctagcgaaatggaggtggaggatgttgcaaaaa |
53561377 |
T |
|
| Q |
416 |
ggtggctccatgtggaaggatgttttaagggagaaatatggtgag |
460 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53561378 |
ggtggctccatgtggaaggatgttttgagggagaaatatggtgag |
53561422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 42112258 - 42112222
Alignment:
| Q |
240 |
tggtgagaattcaaagggaattcctttggggaggtgt |
276 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||| |
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| T |
42112258 |
tggtgagaattcaaagagaattcctatggggaggtgt |
42112222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 57 - 457
Target Start/End: Original strand, 4902575 - 4902976
Alignment:
| Q |
57 |
gcgaatccgggaagagtggcaacttgggatcctttttgcgat-tcctaacaaatagattgaatagttgggggaataagttcataagtcttggtggtagag |
155 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| | || | ||||||||||||||| ||||||||||||||| ||||| || |||||||| |||| |
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| T |
4902575 |
gcgaatccgggaagagtggccacttgggaacctttgttgaatcttctaacaaatagattgtttagttgggggaataaattcattagccttggtgggagag |
4902674 |
T |
|
| Q |
156 |
tggtgcttctcaattcggtgttgaatttcattcctatttattacttgtcctttatgagaatgccatctaaagtccggcggaatttggtgagaattcaaag |
255 |
Q |
| |
|
||||||| || |||||||||||||| | ||||||||||||||| ||||| ||||||| |||||| |||||||| || |||| ||||||||||||||| |
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|
| T |
4902675 |
tggtgctgcttaattcggtgttgaactccattcctatttattatttgtcatttatgaaaatgccttctaaagtgtggaggaaagaggtgagaattcaaag |
4902774 |
T |
|
| Q |
256 |
ggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaagataatggaggcttgggggtgaga |
355 |
Q |
| |
|
||| ||||||||||| ||||||||||| || ||| | |||| || || |||||||||||||||||||||||| |||| ||||||| ||||||||||| |
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| T |
4902775 |
ggagttcctttggggtggtgtggagggtggtaggggcattaattgggtgaagtggaaggtggtgtgtcaacctaaaggggatggaggtttgggggtgagg |
4902874 |
T |
|
| Q |
356 |
gatgtcaatgttgttaacttaagccttctagcgaaatggaggtggaggatgttgcaaaaaggtggctccatgtggaaggatgttttaagggagaaatatg |
455 |
Q |
| |
|
||| | | || || |||||||||||| |||| |||||| |||||||| | ||||| |||| | || | |||||||| ||| | ||||||||||||| |
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|
| T |
4902875 |
gatattagggtggtgaacttaagccttttagcaaaatggcggtggaggcttttgcatgaagggagttcgttttggaaggaggttcttagggagaaatatg |
4902974 |
T |
|
| Q |
456 |
gt |
457 |
Q |
| |
|
|| |
|
|
| T |
4902975 |
gt |
4902976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 13959983 - 13959898
Alignment:
| Q |
245 |
agaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaa |
330 |
Q |
| |
|
||||| |||||||| | |||||||||||||| ||||||||||||| |||||||| || || |||| |||||||||||||||| |
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|
| T |
13959983 |
agaatccaaagggagcttctttggggaggtgttgagggagggaggaaaattagttgggttaaatggagtttggtgtgtcaaccgaa |
13959898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 44683335 - 44683371
Alignment:
| Q |
240 |
tggtgagaattcaaagggaattcctttggggaggtgt |
276 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |
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| T |
44683335 |
tggtgagaattcaaagagaattcctatggggaggtgt |
44683371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 22196065 - 22196158
Alignment:
| Q |
240 |
tggtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaaga |
333 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| | ||||||||||||| ||||||| || | |||||||||||||||| ||||||||| |
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| T |
22196065 |
tggttagaattcaaagggaattcctttggggtggtttagagggagggaggaagattagttgggttagttggaaggtggtgtgtccaccgaaaga |
22196158 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 47326722 - 47326807
Alignment:
| Q |
245 |
agaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaa |
330 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || |||||| |||| |||||| | || |||||||| ||||||||||||||||| |
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|
| T |
47326722 |
agaattcaaagggagttcctttggggaggtgcggcgggaggtaggaaaattagatgggtgaagtggagtgtggtgtgtcaaccgaa |
47326807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 21943386 - 21943340
Alignment:
| Q |
108 |
atagattgaatagttgggggaataagttcataagtcttggtggtaga |
154 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
21943386 |
atagattgaataattggggtaataagttcattagtcttggtggtaga |
21943340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 28570686 - 28570722
Alignment:
| Q |
242 |
gtgagaattcaaagggaattcctttggggaggtgtgg |
278 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
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|
| T |
28570686 |
gtgagaattcaaagagaattcctttggggaggtgtgg |
28570722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 20793418 - 20793511
Alignment:
| Q |
240 |
tggtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaaga |
333 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||| ||| | ||||||||||||| ||||||| || | |||||||||||||||||||||||||| |
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|
| T |
20793418 |
tggttagaattcaaagagaatttctttggggtggtttagagggagggaggaagattagttgggttagttggaaggtggtgtgtcaaccgaaaga |
20793511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 10429422 - 10429470
Alignment:
| Q |
248 |
attcaaagggaattcctttggggaggtgtggagggagggaggagaatta |
296 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| |||| ||||| |
|
|
| T |
10429422 |
attcaaagggagttcctttggggaggtgtggcgggaggaaggaaaatta |
10429470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 360
Target Start/End: Complemental strand, 4864502 - 4864387
Alignment:
| Q |
245 |
agaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaagataatggaggct |
344 |
Q |
| |
|
||||| ||||| || || |||||||| ||||| | |||||| |||| ||||| || || |||||||| |||||||||||||||| || |||| ||| |
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|
| T |
4864502 |
agaatccaaagagagtttctttggggtggtgtagggggaggaaggaaaattaattgggtgaagtggagcttggtgtgtcaaccgaaggaaaatgaaggtc |
4864403 |
T |
|
| Q |
345 |
tgggggtgagagatgt |
360 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
4864402 |
tgggggttagagatgt |
4864387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 42749946 - 42749862
Alignment:
| Q |
242 |
gtgagaattcaaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaac |
326 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||| || || |||| ||||||| || || ||||||| |||| ||||||| |
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|
| T |
42749946 |
gtgagaattcaaagagaatttctttggggaggagtgggaggtggtaggaagattagttgggtgaggtggaagttggtttgtcaac |
42749862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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