View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14428_low_16 (Length: 463)
Name: NF14428_low_16
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 20 - 448
Target Start/End: Complemental strand, 36025379 - 36024951
Alignment:
| Q |
20 |
aatagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025379 |
aatagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaa |
36025280 |
T |
|
| Q |
120 |
tggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaataaattatacatcttttattcatgtcatgac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36025279 |
tggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaattacaagtaaataaaataaattatacatcttttattcatgtcatgac |
36025180 |
T |
|
| Q |
220 |
tctgtttccaaagttttaatatatataactacttcaaatcatgttcatcttttgttttctattttttaattctatatatgaataaaatagaagtttaaaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025179 |
tctgtttccaaagttttaatatatataactacttcaaatcatgttcatcttttgttttctattttttaattctatatatgaataaaatagaagtttaaaa |
36025080 |
T |
|
| Q |
320 |
cattcattatcttctctctgtctttgatttatcactttttgaaataatttatgttcctttcttgttctacaatcttggtcataaattttatgtaattaat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025079 |
cattcattatcttctctctgtctttgatttatcactttttgaaataatttatgttcctttcttgttctacaatcttggtcataaattttatgtaattaat |
36024980 |
T |
|
| Q |
420 |
atatgcagaacaagaatgttgaccttcat |
448 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
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|
| T |
36024979 |
atatgcacaacaagaatgttgaccttcat |
36024951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 36004618 - 36004455
Alignment:
| Q |
20 |
aatagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| | ||| |||| |||||||| || |||||||||||||| |||||| | || | ||| |
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|
| T |
36004618 |
aatagatccatcacatgtgaggaatcaaaatggaagttatgggcaagcctttgcaaaacatgcacgagatttgaagcagaacaaagaaatgttaaagaaa |
36004519 |
T |
|
| Q |
120 |
tggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaa |
183 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||| |||||| ||||||||||| ||| ||||| |
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|
| T |
36004518 |
tggaaagatgctctaactgaagcagccaatttagcagggtggcactctcaaaattacaggtaaa |
36004455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 36034187 - 36034017
Alignment:
| Q |
20 |
aatagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||| | | ||| |||| ||| ||| | ||| |||||||||| | ||||||||| ||||| ||| |
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|
| T |
36034187 |
aatagatccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagcataagcaaaatttgaagcacaacaaagacaagttgcagaaa |
36034088 |
T |
|
| Q |
120 |
tggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaata |
190 |
Q |
| |
|
| ||||||||||||||| ||||| |||| |||| |||||||| ||| ||||||| | |||||||||||| |
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|
| T |
36034087 |
tagaaagatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaaata |
36034017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 36017281 - 36017111
Alignment:
| Q |
20 |
aatagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||| | | ||| |||| ||| || | ||| |||||||||| | ||||||||| ||||| ||| |
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|
| T |
36017281 |
aatagatccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagaataagcaaaatttgaagcacaacaaagacaagttgcagaaa |
36017182 |
T |
|
| Q |
120 |
tggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaata |
190 |
Q |
| |
|
| ||||||||||||||| ||||| |||| |||| |||||||| ||| ||||||| | |||||||||||| |
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|
| T |
36017181 |
tagaaagatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaaata |
36017111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 23353811 - 23353659
Alignment:
| Q |
21 |
atagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaat |
120 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| | | ||| |||||||||||| | | |||||||||||| | || ||||| ||| | |||| |
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|
| T |
23353811 |
atagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgaaaaacataagcgagatttgaagcacaataatgacaagttggagaaat |
23353712 |
T |
|
| Q |
121 |
ggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaat |
173 |
Q |
| |
|
|||||| |||||||||||| || || ||||||| ||| ||| |||||| |||| |
|
|
| T |
23353711 |
ggaaagctgctctcaccgaggcagctaatttagttggttgggactctcgaaat |
23353659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 23449181 - 23449029
Alignment:
| Q |
21 |
atagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaat |
120 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| | | ||| |||| ||||||| | |||||||||||||| | || ||||| ||| | |||| |
|
|
| T |
23449181 |
atagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcaagatttgaagcacaataatgacaagttgaagaaat |
23449082 |
T |
|
| Q |
121 |
ggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaat |
173 |
Q |
| |
|
|||||||| |||||||||| || || ||||| | ||| ||| |||||| |||| |
|
|
| T |
23449081 |
ggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaat |
23449029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 23500944 - 23500777
Alignment:
| Q |
21 |
atagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaat |
120 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| | | ||| |||| ||||||| | | |||||||||||| | || ||||| ||| | |||| |
|
|
| T |
23500944 |
atagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaat |
23500845 |
T |
|
| Q |
121 |
ggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaa |
188 |
Q |
| |
|
|||||||| |||||||||| || || ||||| | ||| ||| |||||| |||| ||| |||| ||||| |
|
|
| T |
23500844 |
ggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaa |
23500777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 23435377 - 23435230
Alignment:
| Q |
26 |
tccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaatggaaa |
125 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| | | ||| |||| ||||||| | | |||||||||||| | || ||||| ||||| ||||||||| |
|
|
| T |
23435377 |
tccatcacatgtgaggaagcagaccgggagttacaagcaagcatttgcaaaacataagcgagatttgaagcacaataatgacaagttgcataaatggaaa |
23435278 |
T |
|
| Q |
126 |
gatgctctcaccgaagctgccaatttagctgggtggtactctcaaaat |
173 |
Q |
| |
|
| |||||||| || || || ||||||| ||| ||| ||||||||||| |
|
|
| T |
23435277 |
gccgctctcactgaggcagctaatttagttggttgggactctcaaaat |
23435230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 23406660 - 23406508
Alignment:
| Q |
21 |
atagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaat |
120 |
Q |
| |
|
|||||||||||| |||||||||| |||| || ||||| | | ||| |||| ||||||| | | |||||| ||||| | || ||||| ||| | |||| |
|
|
| T |
23406660 |
atagatccatcaaatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagatttaaagcacaataatgacaagttgaagaaat |
23406561 |
T |
|
| Q |
121 |
ggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaat |
173 |
Q |
| |
|
|||||||| ||||||| || || || ||||| | ||| ||| ||||||||||| |
|
|
| T |
23406560 |
ggaaagattctctcactgaggcagctaatttggttggttgggactctcaaaat |
23406508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 23455942 - 23455778
Alignment:
| Q |
24 |
gatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaatgga |
123 |
Q |
| |
|
|||||||||||||||||||| || | || ||||| | | ||| |||| ||||||| | |||||||||||||| | || | ||| ||| | ||||||| |
|
|
| T |
23455942 |
gatccatcacatgtgaggaagcaaaccgggagttacaagcaagcctttgcaaaacataagcaagatttgaagcacaataatgccaagttggagaaatgga |
23455843 |
T |
|
| Q |
124 |
aagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaa |
188 |
Q |
| |
|
||| ||||||| || || || ||||||| ||| ||| ||||||||||| | | |||||||||| |
|
|
| T |
23455842 |
aagcctctctcactgaggcagctaatttagttggatgggactctcaaaattataggtaaataaaa |
23455778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 12894814 - 12894983
Alignment:
| Q |
20 |
aatagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| || || | ||| |||| |||||| || |||||||||||||| ||||||| | || |||||| |
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|
| T |
12894814 |
aatagatccatcacatgtgaggaatcaaacagggaggtacagtcaagcctttgcaaaacacgagcaagatttgaagcacggcaaagatatgttacaaaaa |
12894913 |
T |
|
| Q |
120 |
tggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaat |
189 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
12894914 |
tggaaagatgctctcattgaagcagccaatttagctgggtggcactctcaaaattacaggtaaataaaat |
12894983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 16334938 - 16335038
Alignment:
| Q |
102 |
aaagacaaattgcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaataaattatacatc |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| ||||| | ||||||||||| |||||| |||| |
|
|
| T |
16334938 |
aaagacaacttgcaaaaatggaaagatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatc |
16335037 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
16335038 |
t |
16335038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 16124713 - 16124628
Alignment:
| Q |
117 |
aaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaataaattatacatct |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| ||||| ||| | | ||||||||||| |||||| ||||| |
|
|
| T |
16124713 |
aaatggaaagatgctctcaccgaagtctccaatttatctgggtgggactctaaaagttcaaggtaaataaaatgaattatccatct |
16124628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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