View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14428_low_18 (Length: 437)
Name: NF14428_low_18
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_18 |
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| [»] scaffold0056 (2 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 26913505 - 26913886
Alignment:
| Q |
1 |
tcaaactgacattcttatattgtacgacatcacatccaacatgactttatttgctatgatctttatttaattttccatgccaatgcattattactatcac |
100 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26913505 |
tcaaactgacattattatattgtacaacatcacatccaacatgactttatttgctatgatctttatttaattttccatgccaatgcattattactatcac |
26913604 |
T |
|
| Q |
101 |
tcatttttcatcctcatgtcatcaatgtacaattttccttcaagcttgcgtgagaaatatcctttgaagaaatcttccacgctaatgttgttgaacaccg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |
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|
| T |
26913605 |
tcatttttcatcctcatgtcatcaatgtacaattttccttcaagcttgcgtgagaaatatcctttgaagaaatcttccacactaatgtccttgaacactg |
26913704 |
T |
|
| Q |
201 |
caggagttttaggagtaataaggcttggtgctggagcaagaattgcattcaatctagcactgtgaaatgtcgcaatggaaatcctctccttctctgagtt |
300 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
26913705 |
caggagttttaggagtaataaggcttggtactggagcaagaattgcattcaacctagcactgtgaaatgtggcaatcgaaatcctctccttctctgagtt |
26913804 |
T |
|
| Q |
301 |
aattgttgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaatttaaaatatttactaaaatcaa |
382 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
26913805 |
aattgttgctcgatgttcaatacttcgataaataccattcgtcattatctgtcgaacaatttaaaatatttggtaaaatcaa |
26913886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 26914115 - 26914163
Alignment:
| Q |
380 |
caactgagctaagctcacaaggacaatcacacacttgattgagtataat |
428 |
Q |
| |
|
||||||| |||||||||| | ||||||||||||||||||||| |||||| |
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|
| T |
26914115 |
caactgaactaagctcacgaagacaatcacacacttgattgattataat |
26914163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 21212797 - 21212410
Alignment:
| Q |
1 |
tcaaactgacattcttatattgtacgacatcacatccaacatgactttatt------tgctatgatctttatttaattttccatgccaatgcattattac |
94 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
21212797 |
tcaaactgacattattatattgtacaccatcacatccaacatgactatattaatatttgctatgatatttatttaattttccatcccaatgcattattaa |
21212698 |
T |
|
| Q |
95 |
tatcactcatttttcatcctcatgtcatcaatgtacaattttccttcaagcttgcgtgagaaatatcctttgaagaaatcttccacgctaatgttgttga |
194 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
21212697 |
tatcattcttttttcatcctcatgtcatcaatgtacatttttccttcaagctggcgtgagaaatatcctttgaagaaatcttccacactaatgtcgttga |
21212598 |
T |
|
| Q |
195 |
acaccgcaggagttttaggagtaataaggcttggtgctggagcaagaattgcattcaatctagcactgtgaaatgtcgcaatggaaatcctctccttctc |
294 |
Q |
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|
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
21212597 |
acactgcaggggttttaggagtaataaggcttggaactggagcaagaattgcattcaatctagcactgtgaaatgtggcaatggaaatcctctccttctc |
21212498 |
T |
|
| Q |
295 |
tgagttaattgttgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaatttaaaatatttactaaaatcaa |
382 |
Q |
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|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
21212497 |
tgagttaatcgttgctcgatgttcaatacttcgataaataccattcgtcattatctgtcaaacaatttaaaatatttgctaaaatcaa |
21212410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 364
Target Start/End: Complemental strand, 22929428 - 22929324
Alignment:
| Q |
260 |
ctgtgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaa |
359 |
Q |
| |
|
|||||||||| || | |||||||||||| ||||| ||||||| ||||||||| ||||| ||||| |||||||| || || || ||||||||| |||| | |
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|
| T |
22929428 |
ctgtgaaatgctgctacggaaatcctctctttctccgagttaactgttgctcgatgttcgatactccgataaattccgttggtgattatctgtaaaacca |
22929329 |
T |
|
| Q |
360 |
tttaa |
364 |
Q |
| |
|
||||| |
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|
| T |
22929328 |
tttaa |
22929324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 23021629 - 23021695
Alignment:
| Q |
273 |
caatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccatt |
339 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||| ||||| ||||| || ||||||||||| ||||| |
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|
| T |
23021629 |
caatagaaatcctctctttctttgagttaattgtagctcgatgttcgatgcttcgataaattccatt |
23021695 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 367
Target Start/End: Complemental strand, 22933793 - 22933689
Alignment:
| Q |
263 |
tgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaattt |
362 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||| || | | || |||| || ||||| ||||| ||||| |||||||| | ||||||| ||| |||| |
|
|
| T |
22933793 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccattcgtaaatatctgtaaaaggattt |
22933694 |
T |
|
| Q |
363 |
aaaat |
367 |
Q |
| |
|
||||| |
|
|
| T |
22933693 |
aaaat |
22933689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 21250989 - 21250925
Alignment:
| Q |
263 |
tgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcg |
327 |
Q |
| |
|
||||||| |||||||||||||| || || ||||| |||| ||||||||| |||||||| ||||| |
|
|
| T |
21250989 |
tgaaatgcagcaatggaaatcctttctttttctgaattaactgttgctcgatgttcaatgcttcg |
21250925 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 21264827 - 21264755
Alignment:
| Q |
260 |
ctgtgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaa |
332 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||| | || ||||| ||||| || |||||||||| |
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|
| T |
21264827 |
ctgtgaaatgatgcaatggaaatcctctctttctttgagttcaccgtagctcgatgttcgatgcttcgataaa |
21264755 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 104 - 382
Target Start/End: Original strand, 61907 - 62185
Alignment:
| Q |
104 |
tttttcatcctcatgtcatcaatgtacaattttccttcaagcttgcgtgagaaatatcctttgaagaaatcttccacgctaatgttgttgaacaccgcag |
203 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| | || || |||||||| || | |
|
|
| T |
61907 |
ttttccatcctcatgacatcaatgtgtgattttccttcaagcttgcgtgagaaatatgctttaaagaaatcttccactccaacattattgaacactgctg |
62006 |
T |
|
| Q |
204 |
gagttttaggagtaataaggcttggtgctggagcaagaattgcattcaatctagcactgtgaaatgtcgcaatggaaatcctctccttctctgagttaat |
303 |
Q |
| |
|
| ||| |||||| | |||||||||||||||| |||||||||||||| |||| |||||| |||||| ||||||||||||||||| || |||| |||||| |
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|
| T |
62007 |
ggctttcaggagtgacaaggcttggtgctggacaaagaattgcattcagtctaccactgttaaatgtggcaatggaaatcctctctttttctgcgttaat |
62106 |
T |
|
| Q |
304 |
tgttgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaatttaaaatatttactaaaatcaa |
382 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | |||| || ||||||| |
|
|
| T |
62107 |
tgttgctcgatgttcaatacttcgataaataccattcgtcattatctgtcaaacaattcaacaaatttgcttaaatcaa |
62185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 61824 - 61864
Alignment:
| Q |
38 |
aacatgactttatttgctatgatctttatttaattttccat |
78 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
61824 |
aacatgactatatttgccataatctttatttaattttccat |
61864 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 351
Target Start/End: Original strand, 22517 - 22608
Alignment:
| Q |
260 |
ctgtgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccattcgtcattatctg |
351 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||| |||| || ||||| |||||||| ||||||||||| ||||| |||| |||||| |
|
|
| T |
22517 |
ctgtgaaatgcagcaatggaaatcctcgctttctctgaattaaccgtagctcgatgttcaatgcttcgataaattccatttgtcaatatctg |
22608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 351
Target Start/End: Complemental strand, 9869 - 9781
Alignment:
| Q |
263 |
tgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccattcgtcattatctg |
351 |
Q |
| |
|
|||||||| || || || |||||||||||| |||| || | ||||||||| ||||||||||||| ||||| ||||| |||| |||||| |
|
|
| T |
9869 |
tgaaatgtagccatagatatcctctccttcactgaattcactgttgctcgatgttcaatacttctgtaaattccattggtcaatatctg |
9781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 3612224 - 3612253
Alignment:
| Q |
378 |
atcaactgagctaagctcacaaggacaatc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3612224 |
atcaactgagctaagctcacaaggacaatc |
3612253 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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