View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_19 (Length: 437)
Name: NF14428_low_19
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 194 - 371
Target Start/End: Original strand, 43285680 - 43285859
Alignment:
| Q |
194 |
cttcataaattttct--actaaaaataattttggttagggcatgatgacattaaatattggtatatcttgtagttaagatacaaacttttgtttactaaa |
291 |
Q |
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| T |
43285680 |
cttcataaattttctctactaaaaataattttggttagggcatgatgacattaaatattggtatatcttgtaattaagatacaaacttttgtttactaaa |
43285779 |
T |
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| Q |
292 |
ttgtatagtctagtctattttattagacctaatctgaaatgattattaaagcttatttccattggttctacactagatgc |
371 |
Q |
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| T |
43285780 |
ttgtatagtctagtctattttattagacctaatctaaaatgattattaaagcttatttccattggttctacactagatgc |
43285859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 43285578 - 43285645
Alignment:
| Q |
1 |
tattttctttatttttattttcttatggatatgcacgagggggtttatatttatcatcattatatact |
68 |
Q |
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| T |
43285578 |
tattttctttatttttattttcttatggatatgcacgagggggtttatatttatcatcattatatact |
43285645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 43285856 - 43285884
Alignment:
| Q |
394 |
atgctctttcttctttggatatataacat |
422 |
Q |
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| T |
43285856 |
atgctctttcttctttggatatataacat |
43285884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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