View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_23 (Length: 386)
Name: NF14428_low_23
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 46955617 - 46955248
Alignment:
| Q |
1 |
ccaataaagaatccaatacaaatgaaatatcttccttccaatctttatcggcatttgtttggagaagtgtgacttgtgcacgaagaataaaacatgatca |
100 |
Q |
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| T |
46955617 |
ccaataaagaatccaatacaaatgaaatatcttccttccaatctttatcggcatttgtttggagaagtgtgacttgtgcacgaagactaaaacatgatca |
46955518 |
T |
|
| Q |
101 |
aaaaaccagttgcaagttagccataaacagtagatcaagaatcaaaccacctctcccgcaagagtactttggaaactcagttgatgtggtgagtacagaa |
200 |
Q |
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| T |
46955517 |
aaaaaccagttgcaagttagccataaacaatagatcaagaatcaaaccacctctcccgcaagagtactttggaaactcagttgatgtggtgagtacagaa |
46955418 |
T |
|
| Q |
201 |
acgactgtaggcgaattgcttgagaatgatttaggatgggcagcgtggaaggtgcatacacttgttgtgaatcatgacgatagagaggtgagagagatgc |
300 |
Q |
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| T |
46955417 |
acgactgtaggcgaattgcttgagaatgatttaggatgggcagcgtggaaggtgcatacacttgttgtgaatcatgacgatagagaggtgagagagatgc |
46955318 |
T |
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| Q |
301 |
tcaaaaagtggttagagtctccggttgtctaccaacttggtcgccattttgatcccttcagtgtggtgat |
370 |
Q |
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| T |
46955317 |
tcaaaaagtggttagagtctccggttgtctaccaacttggtcgccattttgatcccttcagtgtggtgat |
46955248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 356
Target Start/End: Complemental strand, 46958446 - 46958115
Alignment:
| Q |
25 |
aaatatcttccttccaatctttatcggcatttgtttggagaagtgtgacttgtgcacgaagaataaaacatgatcaaaaaaccagttgcaagttagccat |
124 |
Q |
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| T |
46958446 |
aaatatcttcgttccaggctttatcagcacatgtttggagatgtgtcacacgtgcacgcggactaacaaatgatcaaaaaacaagttgtaagttagctat |
46958347 |
T |
|
| Q |
125 |
aaacagtagatcaagaatcaaaccacctctcccgcaagagtactttggaaactcagttgatgtggtgagtacagaaacgactgtaggcgaattgcttgag |
224 |
Q |
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| T |
46958346 |
aaataatcgactaagattggaaccacctttgccgcaggagtactttggaaacacagttgatgtggttagtgcagaaatgactgtggacgaattgcttcag |
46958247 |
T |
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| Q |
225 |
aatgatttaggatgggcagcgtggaaggtgcatacacttgttgtgaatcatgacgatagagaggtgagagagatgctcaaaaagtggttagagtctccgg |
324 |
Q |
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| T |
46958246 |
aataatctgggatgggcagcatggaaggttaatgtggctgtggtgaatcacgacgacaaacaagtgcgaaagatgctgaaagagtggttagagtctcctg |
46958147 |
T |
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| Q |
325 |
ttgtctaccaacttggtcgccattttgatccc |
356 |
Q |
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| T |
46958146 |
ttgtataccaactcggtcgccactttgatccc |
46958115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 46974584 - 46974479
Alignment:
| Q |
145 |
aaccacctctcccgcaagagtactttggaaactcagttgatgtggtgagtacagaaacgactgtaggcgaattgcttgagaatgatttaggatgggcagc |
244 |
Q |
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|||||||||| ||| | || || ||||| || ||| || ||| ||||||| | |||||||| ||||| |||||||| ||||||||| ||||||||||||| |
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| T |
46974584 |
aaccacctcttccgaaggaatattttgggaattcacttcatgcggtgagtgctgaaacgacggtaggggaattgctggagaatgatctaggatgggcagc |
46974485 |
T |
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| Q |
245 |
gtggaa |
250 |
Q |
| |
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||||| |
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| T |
46974484 |
atggaa |
46974479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 46951152 - 46951032
Alignment:
| Q |
138 |
agaatcaaaccacctctcccgcaagagtactttggaaactcagttgatgtggtgagtacagaaacgactgtaggcgaattgcttgagaatgatttaggat |
237 |
Q |
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||||| ||||||||||| || ||||||| ||||| | ||||||||| |||||| | |||| || ||||| |||||||| || |||||||| |||| |
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| T |
46951152 |
agaatgaaaccacctcttccaaaagagtattttgggacctcagttgacacagtgagtgtaaaaacaaccgtaggtgaattgctagaaaatgatttgggat |
46951053 |
T |
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| Q |
238 |
gggcagcgtggaaggtgcata |
258 |
Q |
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||||||| ||||||||||||| |
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| T |
46951052 |
gggcagcatggaaggtgcata |
46951032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 46980534 - 46980468
Alignment:
| Q |
184 |
atgtggtgagtacagaaacgactgtaggcgaattgcttgagaatgatttaggatgggcagcgtggaa |
250 |
Q |
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| T |
46980534 |
atgtagtgagtgctgaaacgacggtaggagagttgctggagaatgatctaggatgggcagcatggaa |
46980468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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