View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_25 (Length: 356)
Name: NF14428_low_25
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 43701969 - 43702318
Alignment:
| Q |
16 |
tgtggatgagggaatatggtttgtctaaaatacaaccttattacttatatagaatttagatccttggttattaacgagacagaaacataaatctaaatga |
115 |
Q |
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| T |
43701969 |
tgtggatgagggaatatggtttgtttaaaatacaaccttattacttatataggatttggatccttggttattaaagagactgaaacatatatctaaatga |
43702068 |
T |
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| Q |
116 |
tgacttatgacgtgtgagagttcaatcattatatctggtcggagtagtcacatgatagttttgaca-actcaaccctttggtaactgaaat------nnn |
208 |
Q |
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| T |
43702069 |
tgacttatgacgtgcgagagttcaatcattatatctgatcgggatagtcacatgatagttttgacagactcaaccctttggtaactgaaataaaataaaa |
43702168 |
T |
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| Q |
209 |
nnnnnngattaaatagatacatctttcaactttttcatctttaagtaataatttattttcctttcaattgaatccttgctagcgtggatttcaaattcgt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
43702169 |
taaaaagattaaatagatacatctttcaactttttcatctttaagtaataatttattttactttcaattgaatccttgccagcgtggatttcaaattcgt |
43702268 |
T |
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| Q |
309 |
ttgaataattgacacacaacacaaac--atataatgtgtaacaaccttaa |
356 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43702269 |
ttgaataattgacacacaacacaaacatatataatgtgtaacaaccttaa |
43702318 |
T |
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