View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_3 (Length: 622)
Name: NF14428_low_3
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 325 - 605
Target Start/End: Complemental strand, 8398899 - 8398629
Alignment:
| Q |
325 |
taaaataattacttgatactctgctttatgccttaagccgcaatttctttcttcnnnnnnnggcttaatggaacttttgattctatacatcttatagaag |
424 |
Q |
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| T |
8398899 |
taaaataattacttgatactttactttatgccttaagccgcaatttgtttcttctttttttggcttaatggaacttttgattctatacatcttatagcag |
8398800 |
T |
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| Q |
425 |
cccctagtttcagcaattaagtttcaaacatgatttcctttcctgattta-ctctggtcaaactaggaatacgaaaagtgttattagactttataaagtt |
523 |
Q |
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| T |
8398799 |
cccctagtttcag------------aaacatgatttcctttgctgatctaactctggtcaaactaggaatacgaaaagtgttattagactttataaagtt |
8398712 |
T |
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| Q |
524 |
ttaagattgcaataagttgcttgatctttgacattttattttaaaaggtta-aggaatgagattcaagatggaccagttttgt |
605 |
Q |
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| T |
8398711 |
ttaagattgcaataagttgcttgatctttgacattttattttaaaaggttaggggaatgagattcaagatggaccagttttgt |
8398629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 8399809 - 8399660
Alignment:
| Q |
39 |
gagttcttaacaatggtgttactttgtcagttgaaaccagacctagaaactcacaagaatatcagttatagatgctgggttttgcattgaaggcacggtg |
138 |
Q |
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| T |
8399809 |
gagttcttaacaatggtgttactttttcagttgaaaccagacctagaaactcacaagaatatcagttatagatgctgggttttgcattgaaggcacggtg |
8399710 |
T |
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| Q |
139 |
atggaggatacagaagcctctagatgaatgtgatatgtagaagtcttgac |
188 |
Q |
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| T |
8399709 |
atggaggatacagaagcctttagaggaatgtgatatgtagaagtcttgac |
8399660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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