View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_39 (Length: 274)
Name: NF14428_low_39
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_39 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 54725384 - 54725640
Alignment:
| Q |
17 |
agccttcaatgaaattagctgatgattctgatacaactggggtgatatcacagtcatcctcaggtggtccaacacttagttttgccaccttagccttcac |
116 |
Q |
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| T |
54725384 |
agccttcaatgaaattagctgatgattctgatacaactggggtgatatcacagtcatcctcaggtggtccaacgcttagttttgccaccttagccttcac |
54725483 |
T |
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| Q |
117 |
tttctcaaccaaagtatcagcaactgattctattaccaagacaaccttaacagcagtacacctctgaccacttttcatgaagnnnnnnnnnnngttcagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
54725484 |
tttctcaaccaaagtatcagcaactgattctattaccaagacaaccttaacagcagtacacctctgaccacttttcatgaag-aaaaaaaaaagttccgt |
54725582 |
T |
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| Q |
217 |
aagtggcattaaaattttgaaaatagccattcattcgtgagaatatgcatttaatttc |
274 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54725583 |
aagtggcattaaaattttgaaaatagccattcatttgtgagaatatgcatttaatttc |
54725640 |
T |
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