View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14428_low_4 (Length: 598)

Name: NF14428_low_4
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14428_low_4
NF14428_low_4
[»] chr1 (6 HSPs)
chr1 (20-572)||(7432872-7433424)
chr1 (346-579)||(34644540-34644775)
chr1 (415-489)||(28041116-28041190)
chr1 (358-501)||(2764465-2764609)
chr1 (421-494)||(25375817-25375890)
chr1 (511-579)||(37932116-37932185)
[»] chr5 (5 HSPs)
chr5 (359-494)||(37873622-37873758)
chr5 (346-485)||(25663025-25663165)
chr5 (422-494)||(15292010-15292082)
chr5 (425-494)||(32230491-32230560)
chr5 (415-488)||(14423722-14423795)
[»] chr8 (5 HSPs)
chr8 (341-579)||(39434636-39434876)
chr8 (363-579)||(24125019-24125237)
chr8 (359-579)||(25021712-25021934)
chr8 (359-484)||(38815281-38815407)
chr8 (423-579)||(500279-500436)
[»] chr4 (7 HSPs)
chr4 (358-553)||(55933387-55933581)
chr4 (363-488)||(34107684-34107812)
chr4 (358-488)||(53619572-53619703)
chr4 (416-486)||(600684-600754)
chr4 (415-492)||(41440068-41440145)
chr4 (358-405)||(4419249-4419297)
chr4 (362-433)||(38535614-38535686)
[»] chr3 (5 HSPs)
chr3 (423-579)||(49018015-49018172)
chr3 (363-486)||(52741504-52741628)
chr3 (422-579)||(13582560-13582718)
chr3 (359-446)||(38146043-38146131)
chr3 (415-494)||(44198811-44198890)
[»] chr7 (7 HSPs)
chr7 (416-488)||(22198031-22198103)
chr7 (416-488)||(22239718-22239790)
chr7 (358-488)||(28517277-28517408)
chr7 (359-471)||(9281138-9281251)
chr7 (359-471)||(9292109-9292222)
chr7 (412-488)||(982990-983066)
chr7 (363-494)||(21326822-21326954)
[»] chr6 (4 HSPs)
chr6 (415-494)||(17249289-17249368)
chr6 (363-579)||(4206494-4206712)
chr6 (468-579)||(12401428-12401540)
chr6 (367-494)||(34554261-34554389)
[»] chr2 (4 HSPs)
chr2 (422-579)||(23484836-23484994)
chr2 (415-488)||(28225044-28225117)
chr2 (458-553)||(7760771-7760866)
chr2 (359-488)||(5532407-5532536)
[»] scaffold0031 (1 HSPs)
scaffold0031 (415-494)||(49455-49534)
[»] scaffold0490 (1 HSPs)
scaffold0490 (363-494)||(6325-6457)


Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 20 - 572
Target Start/End: Original strand, 7432872 - 7433424
Alignment:
Q  20 atggtagataagaatttagatttaatagagttatagaccaacgagattattagattagattataggtttctttttaagtggatagttggcctctcagccg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7432872 atggtagataagaatttagatttaatagagttatagaccaacgagattattagattagattataggtttctttttaagtggatagttggcctctcagccg 7432971  T
Q  120 ataacttgtcatcatgtctcaaccaaggtagcacatatactttacgtacccaacgtcttttcttaccttttccctttctttcttcaatacaaagaaaatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7432972 ataacttgtcatcatgtctcaaccaaggtagcacatatactttacgtacccaacgtcttttcttaccttttccctttctttcttcaatacaaagaaaatg 7433071  T
Q  220 acaaaatatatgtgaagctttttaatttgattaattgcactccctctattttaactcgacttttattgataaagaattctctttttcatatgaacataat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7433072 acaaaatatatgtgaagctttttaatttgattaattgcactccctctattttaactcgacttttattgataaagaattctctttttcatatgaacataat 7433171  T
Q  320 atctatgcacataggagatatattagattgatatggacaaccctttgaactttatgtagaagtcaacaacatctggtgctacgaagttaagtgtatcaaa 419  Q
    |||||||||||||||||||||||||||||||||||||  |||| || ||||||| |||||| |||||||| |||||||||| |||||||||||| |||||    
T  7433172 atctatgcacataggagatatattagattgatatggattacccgttcaactttacgtagaaatcaacaacctctggtgctatgaagttaagtgtgtcaaa 7433271  T
Q  420 tgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaa 519  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| ||| |||||||||||    
T  7433272 tgcaaatggtataaaaatacgttgattttatgaacacattttctcatatttgatcactttgcttgacgcgactttgaagacttcctgtcccactgtaaaa 7433371  T
Q  520 gccttgatccataatcgcacaagtggtgaaacccaatcaagcgtacacatgca 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7433372 gccttgatccataatcgcacaagtggtgaaacccaatcaagcgtacacatgca 7433424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 579
Target Start/End: Original strand, 34644540 - 34644775
Alignment:
Q  346 attgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttga 444  Q
    ||||||||| | ||||||||| ||| |||||||||| |||||||| |||| ||||| ||||   |  || |||||  |||||||||||||| || || |     
T  34644540 attgatatgcataaccctttggactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtagg 34644639  T
Q  445 ttttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtg 544  Q
    || |  ||||||  |||||||| ||||| ||||||||||||||| ||||| |||  | | ||| | || |||||||||  || || ||| | ||||||||    
T  34644640 ttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccccgacccctaaacccacaagtg 34644739  T
Q  545 gtgaaa-cccaatcaagcgtacacatgcatgttttc 579  Q
    |||||| |||| |||||   ||||||||||||||||    
T  34644740 gtgaaaccccagtcaagtccacacatgcatgttttc 34644775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 415 - 489
Target Start/End: Complemental strand, 28041190 - 28041116
Alignment:
Q  415 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcg 489  Q
    ||||| |||||||||||||||||  ||||||| |  ||||||| |||||||| ||||| ||||||||||||||||    
T  28041190 tcaaaagcaaatggtataaaaacctgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcg 28041116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 501
Target Start/End: Original strand, 2764465 - 2764609
Alignment:
Q  358 aaccctttgaactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 456  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||||| |||| | |  || ||||| | |||||| |||||| || ||||||| |  ||||||    
T  2764465 aaccctttggactttatgtagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtcggaacac 2764564  T
Q  457 attttctcatatttggtcactttgtttgacgcgactttgaggact 501  Q
     ||||||||| ||||  |||||||| |||| | ||||| ||||||    
T  2764565 gttttctcatgtttgaccactttgtctgacacaacttttaggact 2764609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 25375890 - 25375817
Alignment:
Q  421 gcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 494  Q
    |||||||||||||||||| ||||||  || |||||  |||| |||| ||||||||||||| ||||||| |||||    
T  25375890 gcaaatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgcaacttt 25375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 579
Target Start/End: Complemental strand, 37932185 - 37932116
Alignment:
Q  511 actgtaaaagccttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 579  Q
    |||||||||||||||  || ||||| |||||||||||||||| ||||||||   || |||||||||||||    
T  37932185 actgtaaaagccttggcccctaatcccacaagtggtgaaacctcaatcaagtccacgcatgcatgttttc 37932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 359 - 494
Target Start/End: Complemental strand, 37873758 - 37873622
Alignment:
Q  359 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 457  Q
    |||||||||||| |||||||||| |||||||| |||||||||| ||||  ||  || ||||| |||||||||||||||||| ||||||| |  ||||||     
T  37873758 accctttgaactctatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacg 37873659  T
Q  458 ttttctcatatttggtcactttgtttgacgcgacttt 494  Q
     |||||||| ||||| ||||||| ||||||| |||||    
T  37873658 ctttctcatgtttggccactttgcttgacgcaacttt 37873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 346 - 485
Target Start/End: Complemental strand, 25663165 - 25663025
Alignment:
Q  346 attgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttga 444  Q
    ||||||||| | ||||||||| ||| |||||||||| |||||||| |||| ||||| |||| | |  || ||||| |||||||||||||||||| |||||    
T  25663165 attgatatgcataaccctttggactctatgtagaagatcaacaacttctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttga 25663066  T
Q  445 ttttatgaacacattttctcatatttggtcactttgtttga 485  Q
    || |  ||||||  |||||||| ||||| ||||||||||||    
T  25663065 ttatcagaacacgctttctcatgtttggccactttgtttga 25663025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 494
Target Start/End: Complemental strand, 15292082 - 15292010
Alignment:
Q  422 caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 494  Q
    ||||| ||||||||||| ||||||| |  |||||| ||||||||| ||||| ||||||||||||||| |||||    
T  15292082 caaattgtataaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacgccacttt 15292010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 425 - 494
Target Start/End: Complemental strand, 32230560 - 32230491
Alignment:
Q  425 atggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 494  Q
    ||||||||||| |  ||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||    
T  32230560 atggtataaaagcttgttgattgtcagaacacattttctcatgtttggtcactttgcttgacgcaacttt 32230491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 14423722 - 14423795
Alignment:
Q  415 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 488  Q
    ||||| ||||||||||||||| || ||||||| |  ||||||  |||||||| || |||||||||| |||||||    
T  14423722 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgttcggtcactttgcttgacgc 14423795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 341 - 579
Target Start/End: Original strand, 39434636 - 39434876
Alignment:
Q  341 attagattgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacac 439  Q
    |||| ||||||||| | ||||||||| ||| |||||||||| ||||   | |||| ||||| ||||| ||  || |||||  |||||||||||||| ||     
T  39434636 attacattgatatgcataaccctttggactctatgtagaagatcaaatgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcat 39434735  T
Q  440 gttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcac 539  Q
    ||||||| |  ||||||  |||||||| ||||| ||||||| ||||||| ||||| ||  |||| ||| | |||||||||||||  | || ||| | |||    
T  39434736 gttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtcctactgtaaaagcctccacccctaaacccac 39434835  T
Q  540 aagtggtgaaa-cccaatcaagcgtacacatgcatgttttc 579  Q
    ||||||||||| |||| |||||   ||||||||||||||||    
T  39434836 aagtggtgaaaccccagtcaagtacacacatgcatgttttc 39434876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 363 - 579
Target Start/End: Original strand, 24125019 - 24125237
Alignment:
Q  363 tttgaactttatgtagaagtc-aacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 461  Q
    ||||||||||||||||||| | |||||| |||||||||| ||| | ||   | ||||| ||||||||||||||| || ||||||| |  || |||  |||    
T  24125019 tttgaactttatgtagaaggccaacaacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtcagagcacgcttt 24125118  T
Q  462 ctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaag 560  Q
    ||||| ||||| || |||| |||| ||  |||| ||| || | ||| |||| ||||||| |  ||  ||||||| |||||||||||||| |||| |||||    
T  24125119 ctcatgtttggccattttgcttgatgcagcttttagggctgcttgtcccaccgtaaaaggcacgacgcataatcccacaagtggtgaaaccccagtcaag 24125218  T
Q  561 cgtacacatgcatgttttc 579  Q
      |||||||||||||||||    
T  24125219 tctacacatgcatgttttc 24125237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 579
Target Start/End: Complemental strand, 25021934 - 25021712
Alignment:
Q  359 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 457  Q
    |||||||||||||| ||| || | |||||||| |||||||||| ||||  ||   | ||||| | |||||||||||||||| ||||||| |  |||||||    
T  25021934 accctttgaactttgtgtggatggtcaacaacctctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacaca 25021835  T
Q  458 ttttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaac-ccaat 556  Q
     ||||||||||||   ||||||| ||||| | ||||| ||| ||  ||||   ||||||||| | | || || ||||| ||||||||||||||| ||  |    
T  25021834 ctttctcatatttcaccactttgcttgacacaacttttagggctgtatgtcatactgtaaaaacatcgacccctaatcccacaagtggtgaaactccggt 25021735  T
Q  557 caagcgtacacatgcatgttttc 579  Q
    ||||   ||||||||||||||||    
T  25021734 caagtccacacatgcatgttttc 25021712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 484
Target Start/End: Original strand, 38815281 - 38815407
Alignment:
Q  359 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 457  Q
    |||||||||||| |||||||||| |||||| | |||||||||| ||||   |  || ||||| ||||||||||||||| || ||||||| |  ||||||     
T  38815281 accctttgaactctatgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacg 38815380  T
Q  458 ttttctcatatttggtcactttgtttg 484  Q
     |||||||| ||||| |||||||||||    
T  38815381 ctttctcatgtttggccactttgtttg 38815407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 423 - 579
Target Start/End: Original strand, 500279 - 500436
Alignment:
Q  423 aaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagcc 522  Q
    ||||||||||||| || ||||||| |  |||||| ||||||||| ||||| ||||||| ||||||| ||||| ||| ||    || | || ||||||| |    
T  500279 aaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttagggctgtcggtcctaccgtaaaaggc 500378  T
Q  523 ttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 579  Q
      ||  | ||||| |||||||||||||||| || |||||  |||||||||||||||||    
T  500379 ccgacacctaatcccacaagtggtgaaacctcactcaagtctacacatgcatgttttc 500436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 553
Target Start/End: Complemental strand, 55933581 - 55933387
Alignment:
Q  358 aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 456  Q
    ||||||||| ||| |||||||||| ||||||||  ||| ||||| |||||  |  || ||||| ||||||||||||||| || ||||||| |  |||||     
T  55933581 aaccctttggactctatgtagaaggtcaacaac--ctgatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgttagaacaa 55933484  T
Q  457 attttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaaccc 553  Q
    | |||||||| ||||| ||||||||||||||| ||||| ||| ||   ||| | || ||||||||| ||| || ||| | |||||| ||||||||||    
T  55933483 actttctcatgtttggccactttgtttgacgcaacttttagggctgactgtcctaccgtaaaagccctgacccttaaacccacaaggggtgaaaccc 55933387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 363 - 488
Target Start/End: Complemental strand, 34107812 - 34107684
Alignment:
Q  363 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca--tt 459  Q
    |||||||| |||||||||| |||||| | |||||||||| ||| |  |  || |||||  ||||||||||||||||| ||||||| | ||||||||  ||    
T  34107812 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaacatgttgattatctgaacacacgtt 34107713  T
Q  460 ttctcatatttggtcactttgtttgacgc 488  Q
    ||||||| ||||| ||||| |||||||||    
T  34107712 ttctcatgtttggccacttcgtttgacgc 34107684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 488
Target Start/End: Original strand, 53619572 - 53619703
Alignment:
Q  358 aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 456  Q
    ||||||||  ||| |||||||||| |||||  | |||| ||||| ||||| ||  || |||||  |||||||||||||| || ||||||| |  ||||||    
T  53619572 aaccctttagactctatgtagaaggtcaactgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacac 53619671  T
Q  457 attttctcatatttggtcactttgtttgacgc 488  Q
     ||||||||| ||||| ||||||| |||||||    
T  53619672 gttttctcatgtttggccactttgcttgacgc 53619703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 486
Target Start/End: Complemental strand, 600754 - 600684
Alignment:
Q  416 caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgac 486  Q
    |||| ||||||||||||||| || ||| ||| |  |||||| ||||||||| ||||||||||||| |||||    
T  600754 caaaagcaaatggtataaaagcatgttaattgttagaacacgttttctcatgtttggtcactttgcttgac 600684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 492
Target Start/End: Complemental strand, 41440145 - 41440068
Alignment:
Q  415 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgact 492  Q
    ||||||| |||| ||||||||||||||||| | |  ||||||||||||| || ||||   ||||||||||| ||||||    
T  41440145 tcaaatgtaaatagtataaaaacacgttgaatgttagaacacattttcttatgtttgactactttgtttgaagcgact 41440068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 405
Target Start/End: Original strand, 4419249 - 4419297
Alignment:
Q  358 aaccctttgaactttatgtagaa-gtcaacaacatctggtgctacgaag 405  Q
    ||||||||||||| ||||||||| ||||||||| |||| ||||||||||    
T  4419249 aaccctttgaactctatgtagaaggtcaacaacctctgatgctacgaag 4419297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 433
Target Start/End: Complemental strand, 38535686 - 38535614
Alignment:
Q  362 ctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataa 433  Q
    ||||||||| |||||||| | | |||||| |||||||||| ||||| ||  || |||||||||||||||||||    
T  38535686 ctttgaactctatgtagagggtgaacaacctctggtgctaggaagtcaaaagtgtcaaatgcaaatggtataa 38535614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 579
Target Start/End: Original strand, 49018015 - 49018172
Alignment:
Q  423 aaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagcc 522  Q
    |||||||||||||||| ||||||| |  ||||||| |||||||| |||||||||||||||| |||  ||||| |||  | | ||| | || ||||||| |    
T  49018015 aaatggtataaaaacatgttgattgttagaacacactttctcatgtttggtcactttgttttacgtaactttcagggttgcttgtcctaccgtaaaaggc 49018114  T
Q  523 ttgatccataatcgcacaagtggtgaaac-ccaatcaagcgtacacatgcatgttttc 579  Q
    | ||  | ||||  ||||||||||||||| ||| |||||  |||||||||||||||||    
T  49018115 tcgacacctaattccacaagtggtgaaactccagtcaagtttacacatgcatgttttc 49018172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 363 - 486
Target Start/End: Complemental strand, 52741628 - 52741504
Alignment:
Q  363 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 461  Q
    |||||||| |||||||||| |||||||| |||||||||| |||   ||  || ||||| ||||||||||||||| || ||||||| |  ||||||  |||    
T  52741628 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 52741529  T
Q  462 ctcatatttggtcactttgtttgac 486  Q
    ||||| |||||||| ||||||||||    
T  52741528 ctcatgtttggtcaatttgtttgac 52741504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 422 - 579
Target Start/End: Original strand, 13582560 - 13582718
Alignment:
Q  422 caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagc 521  Q
    ||||||||||||||||||||||||| |  ||||||| ||||| || |||| |||||||| |||||||  |||| ||| || | ||| | || |||||||     
T  13582560 caaatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtcctacggtaaaagg 13582659  T
Q  522 cttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 579  Q
    | |||  | ||||| |||||||| ||||||| |  |||||  |||||||||||||||||    
T  13582660 cctgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgttttc 13582718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 446
Target Start/End: Original strand, 38146043 - 38146131
Alignment:
Q  359 accctttgaactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgatt 446  Q
    |||||||||||| || |||||| || |||||| |||||||||| ||||| ||  || ||||||| |||||||||||||||| |||||||    
T  38146043 accctttgaactctaagtagaatgtaaacaacctctggtgctaggaagtcaaaagtgtcaaatgtaaatggtataaaaacatgttgatt 38146131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 494
Target Start/End: Original strand, 44198811 - 44198890
Alignment:
Q  415 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 494  Q
    ||||| ||||||||||||||| || ||||||| |  ||||||  |||||||| ||||| ||||||| ||||||| |||||    
T  44198811 tcaaaagcaaatggtataaaagcatgttgattctcagaacacgctttctcatgtttggccactttgcttgacgcaacttt 44198890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 416 - 488
Target Start/End: Original strand, 22198031 - 22198103
Alignment:
Q  416 caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 488  Q
    |||| |||||||||||||||||| ||||||| |  ||||||| |||||||| ||||||||||||| |||||||    
T  22198031 caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 416 - 488
Target Start/End: Complemental strand, 22239790 - 22239718
Alignment:
Q  416 caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 488  Q
    |||| |||||||||||||||||| ||||||| |  ||||||| |||||||| ||||||||||||| |||||||    
T  22239790 caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22239718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 358 - 488
Target Start/End: Complemental strand, 28517408 - 28517277
Alignment:
Q  358 aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 456  Q
    ||||||||| ||| |||||||||| |||||    |||| ||||| ||||| ||  || ||||| |||||||||||||||||| ||||||| | | |||||    
T  28517408 aaccctttggactctatgtagaaggtcaactgtctctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacac 28517309  T
Q  457 attttctcatatttggtcactttgtttgacgc 488  Q
      |||||||| ||||| ||||||| |||||||    
T  28517308 gctttctcatgtttggccactttgcttgacgc 28517277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 471
Target Start/End: Complemental strand, 9281251 - 9281138
Alignment:
Q  359 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 457  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||  ||   | |||||| ||||| |||||||| || ||||||| |  ||||||     
T  9281251 accctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacg 9281152  T
Q  458 ttttctcatatttg 471  Q
     |||||||| ||||    
T  9281151 ctttctcatgtttg 9281138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 471
Target Start/End: Complemental strand, 9292222 - 9292109
Alignment:
Q  359 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 457  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||  ||   | |||||| ||||| |||||||| || ||||||| |  ||||||     
T  9292222 accctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacg 9292123  T
Q  458 ttttctcatatttg 471  Q
     |||||||| ||||    
T  9292122 ctttctcatgtttg 9292109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 488
Target Start/End: Original strand, 982990 - 983066
Alignment:
Q  412 gtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 488  Q
    |||||||| ||||||||||||||| || ||||||| |  ||||||  |||||||| ||||| ||||||| |||||||    
T  982990 gtatcaaaagcaaatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccactttgcttgacgc 983066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 494
Target Start/End: Complemental strand, 21326954 - 21326822
Alignment:
Q  363 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 461  Q
    |||||||| |||||| ||| |||||| | |||||||||| ||| |  |  || ||||| ||||||||||||||| || ||||||| |  ||||||  |||    
T  21326954 tttgaactctatgtaaaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 21326855  T
Q  462 ctcatatttggtcactttgtttgacgcgacttt 494  Q
    ||||| ||||| ||||||| |||||||| ||||    
T  21326854 ctcatgtttggccactttgcttgacgcggcttt 21326822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 494
Target Start/End: Complemental strand, 17249368 - 17249289
Alignment:
Q  415 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 494  Q
    ||||| ||||||||||||||| || ||||||| |  ||||||| |||||||| ||||| ||||||||||||||| |||||    
T  17249368 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttt 17249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 363 - 579
Target Start/End: Complemental strand, 4206712 - 4206494
Alignment:
Q  363 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 461  Q
    |||||||| |||||||||| |||||||| |||||||||| |||    |  || ||||| ||||||| ||||||| || ||| ||| |  ||||||  |||    
T  4206712 tttgaactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacacgcttt 4206613  T
Q  462 ctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaag 560  Q
    ||||| ||| | ||||||| ||||||| ||||| | | || ||||| | || |||||||   |||| | ||||| |||||||||||||| |||| |||||    
T  4206612 ctcatgtttagccactttgcttgacgccacttttaaggctgcatgtcctaccgtaaaaggtctgatgcctaatcccacaagtggtgaaaccccagtcaag 4206513  T
Q  561 cgtacacatgcatgttttc 579  Q
      |||||||||||||||||    
T  4206512 tctacacatgcatgttttc 4206494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 579
Target Start/End: Original strand, 12401428 - 12401540
Alignment:
Q  468 tttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaagcgtaca 566  Q
    ||||| ||||||||||||||| ||||| ||  || | ||| | ||  |||||||| ||| |||||||| || ||||||||||| ||||||||||  ||||    
T  12401428 tttggccactttgtttgacgcaacttttagtgctgcttgtcctaccataaaagccctgaaccataatcccataagtggtgaaaccccaatcaagtctaca 12401527  T
Q  567 catgcatgttttc 579  Q
    |||||||||||||    
T  12401528 catgcatgttttc 12401540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 494
Target Start/End: Complemental strand, 34554389 - 34554261
Alignment:
Q  367 aactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctca 465  Q
    |||| ||||||||| ||||| | |||||||||||| ||||   | ||| ||||| | ||||||||||||||||  |||||| |  ||||||  |||||||    
T  34554389 aactctatgtagaaagtcaatagcatctggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcagaacacgctttctca 34554290  T
Q  466 tatttggtcactttgtttgacgcgacttt 494  Q
    | |||||||  |||| ||||||| |||||    
T  34554289 tgtttggtcgttttgcttgacgcaacttt 34554261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 579
Target Start/End: Complemental strand, 23484994 - 23484836
Alignment:
Q  422 caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagc 521  Q
    |||||||||||||| || ||||||| |  |||||   |||||||||||||| ||||||||||||||   |||| ||| ||   ||| |||| || ||||     
T  23484994 caaatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccactttgtttgacgtagcttttagggctagttgtcccaccgttaaagg 23484895  T
Q  522 cttgatccataatcgcacaagtggtgaaaccc-aatcaagcgtacacatgcatgttttc 579  Q
    |  ||  | ||||| ||||||||||||||||| |||||||  |||||||||||||||||    
T  23484894 cccgacacttaatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttc 23484836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 28225044 - 28225117
Alignment:
Q  415 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 488  Q
    ||||| ||||||||||||||| || ||||||| |  ||| ||  |||||||||||||||||||||| |||||||    
T  28225044 tcaaaagcaaatggtataaaagcatgttgattgtcagaatacgctttctcatatttggtcactttgcttgacgc 28225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 553
Target Start/End: Complemental strand, 7760866 - 7760771
Alignment:
Q  458 ttttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaaccc 553  Q
    |||||||||  |||| ||||||  |||||||||||||||||  | | ||| ||||  |||||| |||| | ||||||| |||||||||||||||||    
T  7760866 ttttctcatgattggccactttacttgacgcgactttgagggttgcttgtcccaccataaaagtcttggttcataatcccacaagtggtgaaaccc 7760771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 488
Target Start/End: Original strand, 5532407 - 5532536
Alignment:
Q  359 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 457  Q
    |||||||||||| |||||||||| |||||||| | |||||||| |||| |||  || ||||| | |||| |||||||| || ||||||| |   |||||     
T  5532407 accctttgaactctatgtagaagctcaacaacctatggtgctaggaagctaa-agtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacacg 5532505  T
Q  458 ttttctcatatttggtcactttgtttgacgc 488  Q
    ||||||||| ||||  ||||||| |||||||    
T  5532506 ttttctcatgtttgaccactttgcttgacgc 5532536  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 494
Target Start/End: Original strand, 49455 - 49534
Alignment:
Q  415 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 494  Q
    ||||| ||||||||||||||| |||||||||| |  ||||||  ||||||| |||||  |||||||||||| || |||||    
T  49455 tcaaaagcaaatggtataaaagcacgttgattgtcagaacacgatttctcacatttgaccactttgtttgatgcaacttt 49534  T

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Target: scaffold0490 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 494
Target Start/End: Original strand, 6325 - 6457
Alignment:
Q  363 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 461  Q
    |||||||| |||||||||| |||||| | |||||||||| |||  | |  || ||||| |||||||||||| || || ||||||| |  ||||||  |||    
T  6325 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacacgcttt 6424  T
Q  462 ctcatatttggtcactttgtttgacgcgacttt 494  Q
    ||||| ||||| ||||||  ||||||| |||||    
T  6425 ctcatgtttggccactttacttgacgcaacttt 6457  T

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