View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_41 (Length: 271)
Name: NF14428_low_41
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 36784994 - 36785207
Alignment:
| Q |
1 |
tgacatctaatatttttaaaagtcaaattgagaaattatagaatccaaattaagannnnnnnna-taagtcaaatagttcaatatcgagtacattaaata |
99 |
Q |
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| T |
36784994 |
tgacatctaatatttttaaaagtcaaattgagaaattatagaatccaaattaagattttttttaataagtcaaatagttcaacatcgagtacattaaata |
36785093 |
T |
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| Q |
100 |
cacaattttcattaaaactaccatttaaattattaaagagtgcatcggagacactttttagcatactcctttataaatatatgtatatatttctatgaat |
199 |
Q |
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| T |
36785094 |
cacaattttcataaaaactaccatttaaatgattaaagagtgcatcggagacaattgttaacagtcttctttataaatttatgtatatatttatatgaag |
36785193 |
T |
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| Q |
200 |
gcgtgtattaacaa |
213 |
Q |
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| T |
36785194 |
gtgtgtattaacaa |
36785207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 36785231 - 36785283
Alignment:
| Q |
208 |
taacaatatcattatttccttcttgtttctctcacattgacacattcattcat |
260 |
Q |
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| T |
36785231 |
taacaatatcattatttccttcttgtttctctcgcattgacacattcattcat |
36785283 |
T |
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