View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_42 (Length: 267)
Name: NF14428_low_42
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 2961800 - 2962045
Alignment:
| Q |
13 |
caagcaatgtacctaaatatcacaaatagttgtaaaccctatacagtaaccaaaatccatacaccaaattttcaaatgaattttaagaaactaatttcaa |
112 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2961800 |
caagcaatgtacctaaatatcacaaacaattgtaaaccctatacagtaaccaaaatccatacaccaaattttcaaatgaattttaagaaactaatttcaa |
2961899 |
T |
|
| Q |
113 |
ttaataaacaaaacaaatatcaacaacaacaatggttttcacttttcaacttccaaacaacgacacttctaacaaaaaacgtgtgtgacaaagtcactgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||| |
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| T |
2961900 |
ttaataaacaaaacaaatatcaacaacaacaatggttttcacttttcagcttccaaacaacgacacttctaacaaaaaatgtgtctgacaaagtcattgt |
2961999 |
T |
|
| Q |
213 |
tcgacactttacgttccattatcttttcctcaaattattagtcgtg |
258 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2962000 |
tcgacactttacgttccattatcatttcctcaaattattagtcgtg |
2962045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 9820136 - 9819972
Alignment:
| Q |
91 |
aattttaagaaactaatttcaattaataaacaaaacaaatatcaacaacaacaatggttttcacttttcaacttccaaacaacgacacttctaa-caaaa |
189 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||| ||||| ||||||||||| |||| |
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| T |
9820136 |
aattttaagaaactaatttcaattcgtaaacaaaacaaaaattgacaacaacaattgttttcacttttcaactttaaaacactgacacttctaataaaaa |
9820037 |
T |
|
| Q |
190 |
aacgtgtgtgacaaagtcactgttcgacactttacgttccattatcttttcctcaaattattagt |
254 |
Q |
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|| |||| || || |||||||||| ||| || || || |||| || ||| |||||||||||||| |
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| T |
9820036 |
aatgtgtttgtaaatgtcactgttcaacagttcacatttcattttcattttctcaaattattagt |
9819972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 254
Target Start/End: Original strand, 2950261 - 2950482
Alignment:
| Q |
35 |
caaatagttgtaaaccctatacagtaaccaaaatccatacaccaaattttcaaatgaattttaagaaactaatttcaattaataaacaaaacaaatatca |
134 |
Q |
| |
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|||| ||| |||||||| | ||| ||||||||||| |||||| |||||| ||| |||| ||||| ||||||||||||| ||||||||||||| || | |
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| T |
2950261 |
caaacagtagtaaacccaaaacaataaccaaaatctatacacaaaatttatgaatcaattctaagagactaatttcaatttgtaaacaaaacaaaaatta |
2950360 |
T |
|
| Q |
135 |
acaacaacaatggttttcacttttcaacttccaaacaacgacacttctaacaaaaaacgtgtgt--gacaaagtcactgttcgacactttacgttccatt |
232 |
Q |
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||||| ||||| ||||||||||||| ||| ||||| |||||||||||| |||||| ||||| | || |||| ||||| ||| || || ||||||| |
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| T |
2950361 |
acaacgacaattgttttcacttttcggctttaaaacaccgacacttctaataaaaaaaatgtgtttgtaaacgtcattgttcaacagttcacattccatt |
2950460 |
T |
|
| Q |
233 |
atcttttcctcaaattattagt |
254 |
Q |
| |
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||| ||| ||||||||||||| |
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|
| T |
2950461 |
atcattttatcaaattattagt |
2950482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 2968752 - 2968864
Alignment:
| Q |
78 |
aaattttcaaatgaattttaagaaactaatttcaattaataaacaaaacaaatatcaacaacaacaatggttttcacttttcaacttc--caaacaacga |
175 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||| ||||| ||| |
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| T |
2968752 |
aaatttttgaatcaattttaagaaactaatttcaatttgtaaacaaaacaaaaat---caacaacaatgtttttcacttttcaacttcaaaaaacaccga |
2968848 |
T |
|
| Q |
176 |
cacttctaacaaaaaa |
191 |
Q |
| |
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||||||||| |||||| |
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|
| T |
2968849 |
cacttctaataaaaaa |
2968864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 9819169 - 9819264
Alignment:
| Q |
96 |
taagaaactaatttcaattaataaacaaaacaaatatcaacaacaacaatggttttcacttttcaacttccaaacaacgacacttctaacaaaaaa |
191 |
Q |
| |
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||||||||||||||||||| ||||||||||||| || ||||||||| || ||||||||||||| ||| ||||| ||||||||||| |||||| |
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| T |
9819169 |
taagaaactaatttcaattcgtaaacaaaacaaaaattaacaacaacgattcttttcacttttcagctttaaaacactgacacttctaataaaaaa |
9819264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 9716251 - 9716213
Alignment:
| Q |
91 |
aattttaagaaactaatttcaattaataaacaaaacaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
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|
| T |
9716251 |
aattttaagaaactaatttcaattcgtaaacaaaacaaa |
9716213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 9791570 - 9791395
Alignment:
| Q |
44 |
gtaaaccctatacagtaaccaaaatccatacaccaaattttcaaatgaattttaagaaactaatttcaattaataaacaaaacaaatatcaacaacaaca |
143 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||| |||||||| | | | ||||| ||||||| |
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| T |
9791570 |
gtaaaccctaaacattaaccaaaatccatataccaaattttcaaattaatttcaagaaactaattccaattcataaacaataaataaatcaagaacaaca |
9791471 |
T |
|
| Q |
144 |
atggttttcacttttcaacttccaaacaacgacacttctaacaaaaaacgtgtgtgacaaagtcactgttcgacac |
219 |
Q |
| |
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||| |||| |||||| | ||| ||| | |||||||||| | ||||||||| |||||| |||| |||||||||| |
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|
| T |
9791470 |
atgcttttaactttttatctttgaaagagcgacacttcttatcgaaaacgtgtttgacaatgtcattgttcgacac |
9791395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 219
Target Start/End: Original strand, 9785035 - 9785195
Alignment:
| Q |
59 |
taaccaaaatccatacaccaaattttcaaatgaattttaagaaactaatttcaattaataaacaaaacaaatatcaacaacaacaatggttttcactttt |
158 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||| |||||||||||| |||| |||||||| | | | ||||| || |||| ||||||| |||||| |
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| T |
9785035 |
taaccaaaattcatgcaccaaattttcaaattaatttcaagaaactaattctaattcataaacaataaataaatcaaaaataacagtggttttaactttt |
9785134 |
T |
|
| Q |
159 |
caacttccaaacaacgacacttctaacaaaaaacgtgtgtgacaaagtcactgttcgacac |
219 |
Q |
| |
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|| |||| || | |||||||| ||| ||||||||| ||| || |||| |||||||||| |
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|
| T |
9785135 |
cagcttcggaagaccgacacttttaatcgaaaacgtgtttgataatgtcattgttcgacac |
9785195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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