View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_43 (Length: 260)
Name: NF14428_low_43
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 16867903 - 16868074
Alignment:
| Q |
1 |
tgattttcttttatgtgtttcatgtttacaaacatttgtgaatatgttttttgtttaagattagattgtttcattttgtcatctataaagcagatcggct |
100 |
Q |
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| T |
16867903 |
tgattttcttttatgtgtttcatgtctacaaacatttgtgaatatgttttttgtttaagattagattgtttcattttgtcatctataaagcagatcggct |
16868002 |
T |
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| Q |
101 |
actttgtgccatgtttgtgtcggaagatgactaaatcattttatatcctctgtatgttactataactcatga |
172 |
Q |
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| T |
16868003 |
actttgtgccatgtttgtgtcggaagatgactaaatcattttatatcctctgtatgttactataactcatga |
16868074 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 16868236 - 16868272
Alignment:
| Q |
114 |
tttgtgtcggaagatgactaaatcattttatatcctc |
150 |
Q |
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| T |
16868236 |
tttgtgtcggaagatgactaaatcaatttatttcctc |
16868272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 18229429 - 18229492
Alignment:
| Q |
79 |
tcatctataaagcagatcggctactttgtgccatgtttgtgtcggaagatgactaaatcatttt |
142 |
Q |
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| T |
18229429 |
tcatctataaagcagatcgacttctttgtgtcatgtttgtgttggaagatgactaaatcatttt |
18229492 |
T |
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