View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14428_low_46 (Length: 251)

Name: NF14428_low_46
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14428_low_46
NF14428_low_46
[»] chr4 (34 HSPs)
chr4 (20-240)||(27570124-27570344)
chr4 (24-240)||(27420254-27420473)
chr4 (54-240)||(27425691-27425877)
chr4 (45-224)||(27566042-27566221)
chr4 (67-195)||(27412562-27412690)
chr4 (38-235)||(27415487-27415681)
chr4 (66-240)||(27423113-27423287)
chr4 (67-233)||(27444876-27445033)
chr4 (159-235)||(27506682-27506758)
chr4 (56-226)||(27563435-27563608)
chr4 (134-235)||(27486942-27487043)
chr4 (71-240)||(27557394-27557554)
chr4 (134-226)||(27526201-27526293)
chr4 (134-226)||(27513865-27513957)
chr4 (139-191)||(27554273-27554325)
chr4 (131-235)||(27585644-27585748)
chr4 (134-223)||(27469419-27469508)
chr4 (134-235)||(27501276-27501377)
chr4 (134-226)||(27476646-27476738)
chr4 (141-235)||(27497402-27497496)
chr4 (134-240)||(27523478-27523584)
chr4 (68-113)||(27498326-27498371)
chr4 (159-235)||(27478963-27479039)
chr4 (159-235)||(27486023-27486099)
chr4 (139-191)||(27498379-27498431)
chr4 (134-226)||(27505791-27505883)
chr4 (159-235)||(27527145-27527221)
chr4 (161-240)||(27468402-27468481)
chr4 (134-233)||(27500420-27500519)
chr4 (154-240)||(27431223-27431309)
chr4 (68-113)||(27501228-27501273)
chr4 (68-113)||(27516793-27516838)
chr4 (154-214)||(17970278-17970338)
chr4 (134-226)||(27479860-27479952)
[»] chr5 (3 HSPs)
chr5 (153-235)||(1756837-1756919)
chr5 (158-226)||(1754330-1754398)
chr5 (159-226)||(1754672-1754739)
[»] chr3 (6 HSPs)
chr3 (141-226)||(38024964-38025049)
chr3 (141-226)||(38031416-38031501)
chr3 (141-190)||(50911994-50912043)
chr3 (141-214)||(55084752-55084825)
chr3 (154-240)||(50909939-50910025)
chr3 (154-190)||(50904917-50904953)
[»] chr8 (1 HSPs)
chr8 (141-226)||(21607385-21607470)
[»] chr2 (1 HSPs)
chr2 (154-214)||(3073548-3073608)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 27570344 - 27570124
Alignment:
Q  20 gttattgcttaaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatct 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  27570344 gttattgcttaaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtccccctggtatcatcagaagggcatct 27570245  T
Q  120 ttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570244 ttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtat 27570145  T
Q  220 catacttaagccaaccttcat 240  Q
    |||||||||||||||||||||    
T  27570144 catacttaagccaaccttcat 27570124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 27420254 - 27420473
Alignment:
Q  24 ttgcttaaaagttt---ttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctt 120  Q
    ||||||||||||||   ||||||  ||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| || ||| |    
T  27420254 ttgcttaaaagtttattttatttttaaaccatttcttctaaagttttaacacatacaacaatgggttttcgtttccctggtatcatcagaaaggcatcat 27420353  T
Q  121 tttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatc 220  Q
    |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  27420354 tttctgcaaaccgatcagcttcaaaatctgtggacgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatc 27420453  T
Q  221 atacttaagccaaccttcat 240  Q
    |||||| |||||||||||||    
T  27420454 atacttgagccaaccttcat 27420473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 27425691 - 27425877
Alignment:
Q  54 tattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtgg 153  Q
    ||||||||||| ||||||||||||| |||||||||||||||  ||||||||||||||| || ||| ||||||| ||||||||||||||| ||||||||||    
T  27425691 tattctcaagttttaacacatacaacaatgggttttcgttttgctggtatcatcagaaaggcatcattttctgcaaaccgatcagcttcgaaagctgtgg 27425790  T
Q  154 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 240  Q
    | ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||||||| | |||||| ||||    
T  27425791 acgtgccaaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcat 27425877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 27566221 - 27566042
Alignment:
Q  45 aaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaa 144  Q
    ||||||| || ||||||||| | ||| ||||||  ||||||||||||||||||| |||| |||| ||||| ||| |||  |||||||||| ||| |||||    
T  27566221 aaaaccaatttttctcaagtttgaacgcatacagcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttggaaaccgagcagtttcaa 27566122  T
Q  145 aagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatac 224  Q
    ||| |||||| ||||||||||||||||||||||| ||||||||||||||||| | ||| | |||||||||| ||||||||    
T  27566121 aagttgtggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatac 27566042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 27412562 - 27412690
Alignment:
Q  67 taacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaaggg 166  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||| ||| |||||||||||| ||  ||||||||||    
T  27412562 taacacatacaaaaatgggttttcgtttctctggtatcatcagaagggcatcattttctgcaaaccgagcagtttcaaaagctgttgacatgccaaaggg 27412661  T
Q  167 atatcttgcagtatatgttggagagaaac 195  Q
    |||| |||| || ||||||||||||||||    
T  27412662 atatattgccgtgtatgttggagagaaac 27412690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 27415487 - 27415681
Alignment:
Q  38 ttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatca 137  Q
    |||||| ||||| |||| ||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||| |  ||| ||||||| || ||||  |    
T  27415487 ttattttaaaacaatttcttctcaagttttaacacatacaacaatgggttttcgtgtccctagtatcatcagaaagtcatcattttctgcaagccgagta 27415586  T
Q  138 gcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaacc 235  Q
      |||||||| |||||||||||||||||||||||||||||| |||||||||   ||||| | ||| | |||||||||| |||||||||| | ||||||    
T  27415587 atttcaaaagttgtggatgtgccaaagggatatcttgcagtgtatgttgga---aaacaaaagcgatttgtgatccccatatcatacttgaaccaacc 27415681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 27423113 - 27423287
Alignment:
Q  66 ttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagg 165  Q
    ||||||||||||| ||||||| | |||||| ||||||| ||||||||||  || ||||||| ||||||| ||   |||||||||| |||  ||||||||     
T  27423113 ttaacacatacaacaatgggtatccgtttctctggtattatcagaagggcctcattttctgcaaaccgagcaatatcaaaagctgcggacatgccaaaga 27423212  T
Q  166 gatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 240  Q
    |||||||||| |||||||||||| |||||||||| ||| ||||||||| | |||||||||| | |||||||||||    
T  27423213 gatatcttgctgtatatgttggatagaaacagacacggcatgtgatccgcatatcatacttgaaccaaccttcat 27423287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 27445033 - 27444876
Alignment:
Q  67 taacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaaggg 166  Q
    |||||||||||| |||||||||||||||  | ||||||||||||||||         ||| ||||| | || |||||||||  |||||||||||||||||    
T  27445033 taacacatacaagaatgggttttcgtttaaccggtatcatcagaaggg---------ctgcaaaccaaacatcttcaaaaggcgtggatgtgccaaaggg 27444943  T
Q  167 atatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 233  Q
    ||||||||||||||| ||||||||| ||  || | ||| |||||||||  |||||||||| ||||||    
T  27444942 atatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaa 27444876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 27506682 - 27506758
Alignment:
Q  159 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaacc 235  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||  |||||||||||| ||||||    
T  27506682 ccaaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaacc 27506758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 226
Target Start/End: Complemental strand, 27563608 - 27563435
Alignment:
Q  56 ttctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctt---tttctggaaaccgatcagcttcaaaagctgtg 152  Q
    ||||||||| ||||||||  ||  ||||||||||||||| ||||||||||| ||||||  ||| |   || ||  || |||||||| | |||||| ||||    
T  27563608 ttctcaagttttaacacactcagcaatgggttttcgtttacctggtatcattagaaggtcatcatcgtttacttcaagccgatcagttacaaaagttgtg 27563509  T
Q  153 gatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    || ||||||||||| ||||||||||| || |||||||| ||||| | | |   |||||||||||||||||||||    
T  27563508 gacgtgccaaagggctatcttgcagtgtacgttggagataaacaaaagagaattgtgatccccgtatcatactt 27563435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 27486942 - 27487043
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 233  Q
    |||| |||||||||||||||| || |||||||||||||| ||||| || || |||||||||  || ||||| |||||||||  |||||||||||| ||||    
T  27486942 atcatcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaa 27487041  T
Q  234 cc 235  Q
    ||    
T  27487042 cc 27487043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 27557394 - 27557554
Alignment:
Q  71 acatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatat 170  Q
    ||||| || ||||||||||||||| |||| |||||||||||||| |||         ||||| | || ||||||| | |||||||||||||| |||||||    
T  27557394 acatataagaatgggttttcgtttacctgttatcatcagaagggcatc---------aaaccaagcatcttcaaagggtgtggatgtgccaaggggatat 27557484  T
Q  171 cttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 240  Q
    ||||| ||||||||||||||| ||  || | ||| |||||||||  | |||||||||| |||||| ||||    
T  27557485 cttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcat 27557554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 27526293 - 27526201
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    |||| ||||||||| ||| ||||| |||||||||||||| ||||| |||||||||||||||  || ||||| |||||| || |||||||||||    
T  27526293 atcatcttcaaaaggtgtcgatgttccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatactt 27526201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 27513957 - 27513865
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    |||| ||||||||||||| || |||||||| |||||||| ||||| ||||| |||||||||  || ||||| |||||||||  ||||||||||    
T  27513957 atcatcttcaaaagctgttgacgtgccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatactt 27513865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 27554273 - 27554325
Alignment:
Q  139 cttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagag 191  Q
    |||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  27554273 cttcaaaaggagtggatgtgccaaagggataccttgcagtatatgttggagag 27554325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 27585644 - 27585748
Alignment:
Q  131 ccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagc 230  Q
    |||||||| |||||||| |||||| ||||||||||||||||| ||||| |  ||||| || ||||| | | | | ||||||||||||||||||||| | |    
T  27585644 ccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtgcgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaac 27585743  T
Q  231 caacc 235  Q
    |||||    
T  27585744 caacc 27585748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 27469419 - 27469508
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcata 223  Q
    |||| |||||||||||||||| || |||||||||||||| ||||| || || |||||||||  || ||||| |||||||||  |||||||    
T  27469419 atcatcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcata 27469508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 27501276 - 27501377
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 233  Q
    |||| ||||||||| ||| || || |||||||||| ||| |||||||||||||||||| ||  ||  |||| |||||||||  |||||||||||| ||||    
T  27501276 atcatcttcaaaaggtgtcgaggttccaaagggatgtctagcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaa 27501375  T
Q  234 cc 235  Q
    ||    
T  27501376 cc 27501377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 27476646 - 27476738
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    |||| |||||||| | ||||| || |||||||||||||| ||||| |||||||| ||||||  || ||||| |||||| || |||||||||||    
T  27476646 atcatcttcaaaaaccgtggacgttccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatactt 27476738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 27497496 - 27497402
Alignment:
Q  141 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaacc 235  Q
    |||||| |||| || || |||||||| ||| ||||||| ||||||||||| ||||| | ||||| |||||||||  | |||||||||| ||||||    
T  27497496 tcaaaatctgtagaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaacc 27497402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 27523584 - 27523478
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 233  Q
    |||| |||||||||||||||| || |||||||| ||||| ||||| || || |||||||||  || ||||| |||||| || |||||||| || | ||||    
T  27523584 atcatcttcaaaagctgtggacgttccaaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaa 27523485  T
Q  234 ccttcat 240  Q
     ||||||    
T  27523484 acttcat 27523478  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 27498326 - 27498371
Alignment:
Q  68 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 113  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||    
T  27498326 aacacatacgaaaatgggttttcgtttaccaggtatcatcagaagg 27498371  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 27479039 - 27478963
Alignment:
Q  159 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaacc 235  Q
    |||||||| ||| ||||||| ||||||||||||||||||| ||||| |||  ||||  |||||||||| | ||||||    
T  27479039 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaacc 27478963  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 27486099 - 27486023
Alignment:
Q  159 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaacc 235  Q
    |||||||| ||| ||||||| ||||||||||||||||||| ||||| |||  ||||  |||||||||| | ||||||    
T  27486099 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaacc 27486023  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 27498379 - 27498431
Alignment:
Q  139 cttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagag 191  Q
    |||||||||  |||||  |||||||||||||||| ||||||||||||||||||    
T  27498379 cttcaaaaggcgtggacatgccaaagggatatctagcagtatatgttggagag 27498431  T

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Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 27505883 - 27505791
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    |||| ||||||||| | |||| ||||||||||| ||||| ||||| || || |||||||||  || ||||| |||||| || |||||||||||    
T  27505883 atcatcttcaaaaggtttggaggtgccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatactt 27505791  T

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Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 27527145 - 27527221
Alignment:
Q  159 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaacc 235  Q
    |||||||| |||||||| || ||||||||||| |||||||  |||| |||||||||  ||||| |||||| ||||||    
T  27527145 ccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaacc 27527221  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 27468481 - 27468402
Alignment:
Q  161 aaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 240  Q
    |||||| ||| |||| || |||||||||||||||| |  ||||| |||  |||| ||||||||||||| |||||||||||    
T  27468481 aaagggctatgttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcat 27468402  T

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Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 27500519 - 27500420
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 233  Q
    |||| |||||||| ||||||| || ||||| |||||||| ||||| || || |||||||||  || ||| | |||||||||  |||||||||||| ||||    
T  27500519 atcatcttcaaaatctgtggacgtaccaaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaa 27500420  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 27431309 - 27431223
Alignment:
Q  154 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 240  Q
    ||||||||||||||||| |||||||||||||||| ||  ||  || | ||| |||||||||  |||||||||| | |||||| ||||    
T  27431309 atgtgccaaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcat 27431223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 27501228 - 27501273
Alignment:
Q  68 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 113  Q
    ||||||||||| ||||||||||||||| ||||||||| | ||||||    
T  27501228 aacacatacaagaatgggttttcgtttacctggtatcctaagaagg 27501273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 27516838 - 27516793
Alignment:
Q  68 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 113  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| ||||    
T  27516838 aacacatacaacaatgggttttcgtttacctagtatcatcaaaagg 27516793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 17970278 - 17970338
Alignment:
Q  154 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccc 214  Q
    |||||||||||||||||||||| || || ||||||||| ||  || ||||| |||||||||    
T  17970278 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccc 17970338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 27479860 - 27479952
Alignment:
Q  134 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    |||| ||||||||| | |||| |||||||| || ||||| |||||||| || |||||||||  || ||| | |||||| || |||||||||||    
T  27479860 atcatcttcaaaaggtttggacgtgccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatactt 27479952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 1756919 - 1756837
Alignment:
Q  153 gatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaacc 235  Q
    ||||| |||||||| |||||||||||  |||||||||||||||||| ||||| |||||||||  |||||||||| | ||||||    
T  1756919 gatgtaccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaacc 1756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 1754398 - 1754330
Alignment:
Q  158 gccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    |||||| |||||||| || ||||||||||||||  ||  || ||||| |||||||||||||||||||||    
T  1754398 gccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatactt 1754330  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 1754672 - 1754739
Alignment:
Q  159 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    |||||||| ||| ||||||| ||| |||||||||||||||  ||| ||||||||||  ||||||||||    
T  1754672 ccaaagggctatgttgcagtgtatattggagagaaacagaaacggcatgtgatcccaatatcatactt 1754739  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 38025049 - 38024964
Alignment:
Q  141 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||| ||  || ||||| ||| |||||| | ||||||||    
T  38025049 tcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatactt 38024964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 38031501 - 38031416
Alignment:
Q  141 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||| ||  || ||||| ||| |||||| | ||||||||    
T  38031501 tcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatactt 38031416  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 50912043 - 50911994
Alignment:
Q  141 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggaga 190  Q
    ||||||| |||| ||||||||||||| |||||||| ||||||||||||||    
T  50912043 tcaaaagttgtgaatgtgccaaagggctatcttgcggtatatgttggaga 50911994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 55084752 - 55084825
Alignment:
Q  141 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccc 214  Q
    |||||| ||||| |||||||||| || | ||||||||| |||||||||||||||  || ||||| |||||||||    
T  55084752 tcaaaatctgtgaatgtgccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccc 55084825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 50909939 - 50910025
Alignment:
Q  154 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 240  Q
    ||||||||||||| ||||||||||| |||||||||||| ||  |  ||||| ||| |||||| | |||||||| | |||| ||||||    
T  50909939 atgtgccaaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcat 50910025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 50904953 - 50904917
Alignment:
Q  154 atgtgccaaagggatatcttgcagtatatgttggaga 190  Q
    ||||||||||||||||||||||||| || ||||||||    
T  50904953 atgtgccaaagggatatcttgcagtgtacgttggaga 50904917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 21607470 - 21607385
Alignment:
Q  141 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 226  Q
    ||||||| |||| |||| ||||||||||||||||| ||||||||||||||| ||  || ||||| ||| |||||| | ||||||||    
T  21607470 tcaaaagttgtgaatgtaccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatactt 21607385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 3073548 - 3073608
Alignment:
Q  154 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccc 214  Q
    |||||||||||||||||||||| || || ||||||||| ||  || ||||| |||||||||    
T  3073548 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccc 3073608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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