View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_48 (Length: 246)
Name: NF14428_low_48
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_48 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 477826 - 478033
Alignment:
| Q |
22 |
aaagaaacctctactactacaagaggatgctacaaaagaaggtaattatatcatttatttgttgcattttgtatttttaaatatgcttacatattgtttt |
121 |
Q |
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| T |
477826 |
aaagaaacctctactactacaagaggatgctacaaaagaaggtaattatatcatttatttgttgcattttgtatttttaaatatgcttacatattgtttt |
477925 |
T |
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| Q |
122 |
aaagtagacaatgcatttttaaatataaagtagtatctatagtggatgaataagttaacaccataatttatgtgtaagacttaatactcaatttacaatt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
477926 |
aaagtagacaatgcatttttaaatataaagtagtatctatagtggatgaataagttaacaccataatttatgtgtaagacttaatactcaatttacaata |
478025 |
T |
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| Q |
222 |
ttaatatt |
229 |
Q |
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|||||||| |
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| T |
478026 |
ttaatatt |
478033 |
T |
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