View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14428_low_51 (Length: 239)
Name: NF14428_low_51
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 28847093 - 28847316
Alignment:
| Q |
2 |
gactcttttgctcatcaatcgacaaagtacaaaagtactta---gacataagatgtaaaagatttgtagcagcctcaacaacaccaatacattttcttcc |
98 |
Q |
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| T |
28847093 |
gactcttttgctcatcaatcgacaaagtacaaaagtacttattagacataagatgtaaaagatttgtagcaccctcaacaacaccaatacattttcttcc |
28847192 |
T |
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| Q |
99 |
tcttttacctctattttgccattttggtaaagaaagattatcttctttattttgttgagtagaatatttagaactgttagatgaaaaagatttttgaata |
198 |
Q |
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| T |
28847193 |
tcttttacctctattttgccattttggtaaagaaagattatcttctttattctgttgagtagaatatttagaactgttagatgaaaaagatttttgaata |
28847292 |
T |
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| Q |
199 |
tcatgatttgaaggaggcctaact |
222 |
Q |
| |
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|||| |||||||||||| |||||| |
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| T |
28847293 |
tcataatttgaaggaggactaact |
28847316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 43796732 - 43796656
Alignment:
| Q |
55 |
aaaagatttgtagcagcctcaacaacaccaatacattttcttcctcttttacctctattttgccattttggtaaaga |
131 |
Q |
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|||||||||| ||| ||||| ||| ||||||||| ||||| |||||| || |||| || ||||||||||| ||||| |
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| T |
43796732 |
aaaagatttgcagccgcctcgacactaccaatacactttctacctcttctatctctcttctgccattttggcaaaga |
43796656 |
T |
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