View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14428_low_8 (Length: 534)
Name: NF14428_low_8
Description: NF14428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14428_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 22613009 - 22613286
Alignment:
| Q |
1 |
gaatcttgaatcaataactttagatttcataaaaaataactgatgcttcgtataccattattagagaaagacaatacattattttcttcatttggaacag |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22613009 |
gaatcttgaatcgataactttagatttcataaaaaataactgatgcttcgtataccattattagagaaagacaatacattattttcttcatttggaacag |
22613108 |
T |
|
| Q |
101 |
acgtgccgcaacagttgtaaaagtacgcttgaagcaatcaccggaagccaaccacctaccaagtaagaaaaaattattactaaatatgacttaagttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22613109 |
acgtgccgcaacagttgtaaaagtacacttgaagcaatcaccggaagccaaccacctaccaattaagaaaaaattattactaaatatgacttaagttttc |
22613208 |
T |
|
| Q |
201 |
tctacttagtatgaaaggactacaacaaaaaagcttttgaggaaactgaacgctaaaaacttataattattgatatag |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22613209 |
tctacttagtatgaaaggactacaacaaaaaagcctttgaggaaactgaatgctaaaaacttataattattgatatag |
22613286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 354 - 519
Target Start/End: Original strand, 22613362 - 22613527
Alignment:
| Q |
354 |
tgagtttgtactttgatgactaacctgaatcctctacagtcgactgaactgtaaagctgactgcagagaatccagtttgtttgatgacagaaccaaaaca |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22613362 |
tgagtttgtactttgatgactaacctgaatcctctacagtcgactgaactataaagctgactgcagagaatccagtttgtttgatgacagaaccaaaaca |
22613461 |
T |
|
| Q |
454 |
tattacaaattatttggaagaaaagtaccataccttagttctttgtcctgaagtatcgaactgatt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22613462 |
tattacaaattatttggaagaaaagtaccataccttagttctttgtcctgaagtatcgaactgatt |
22613527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University